Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq50892 246 8e-63 seq43102 246 8e-63 seq38168 105 2e-20 >seq50892 Length=141790 Score = 246 bits (272), Expect = 8e-63 Identities = 297/403 (74%), Gaps = 2/403 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct 72791 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 72850 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||| |||| |||||| |||||||||||||||| | ||| |||| |||| || ||| Sbjct 72851 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTCAACTGT 72910 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| |||| ||| | ||| ||| | | ||| ||||||||| | ||| Sbjct 72911 TAAATCTTGAGGCTCAACTTCAAAATCGCAGTCGAAACTATTAGACTAGAGTATAGTAGA 72970 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || |||||| | ||| ||| ||||||||||||||||| | | ||||||| |||| Sbjct 72971 GGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGG 73030 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| ||||| || ||| || |||| |||||||| ||| |||||| | Sbjct 73031 CGAAAGCACTTTACTGGGCTATTACTAACACTCAGAGACGAAAGCTAGGGTAGCAAATGG 73090 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG--GGGATTTA 360 |||||||||||| ||||||| ||| ||||| || ||||| ||||| ||| | Sbjct 73091 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGATGTTGAACAGATCGA 73150 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 | | ||| | ||||||||||| |||| ||||||||| Sbjct 73151 CCTGTGCAGTATCAAAGCTAACGCGTTAAGTATCCCGCCTGGG 73193 Score = 246 bits (272), Expect = 8e-63 Identities = 297/403 (74%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct 139298 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 139239 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||| |||| |||||| |||||||||||||||| | ||| |||| |||| || ||| Sbjct 139238 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTCAACTGT 139179 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| |||| ||| | ||| ||| | | ||| ||||||||| | ||| Sbjct 139178 TAAATCTTGAGGCTCAACTTCAAAATCGCAGTCGAAACTATTAGACTAGAGTATAGTAGA 139119 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || |||||| | ||| ||| ||||||||||||||||| | | ||||||| |||| Sbjct 139118 GGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGG 139059 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| ||||| || ||| || |||| |||||||| ||| |||||| | Sbjct 139058 CGAAAGCACTTTACTGGGCTATTACTAACACTCAGAGACGAAAGCTAGGGTAGCAAATGG 138999 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG--GGGATTTA 360 |||||||||||| ||||||| ||| ||||| || ||||| ||||| ||| | Sbjct 138998 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGATGTTGAACAGATCGA 138939 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 | | ||| | ||||||||||| |||| ||||||||| Sbjct 138938 CCTGTGCAGTATCAAAGCTAACGCGTTAAGTATCCCGCCTGGG 138896 >seq43102 Length=56976 Score = 246 bits (272), Expect = 8e-63 Identities = 297/403 (74%), Gaps = 2/403 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct 13502 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 13561 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||| |||| |||||| |||||||||||||||| | ||| |||| |||| || ||| Sbjct 13562 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTCAACTGT 13621 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| |||| ||| | ||| ||| | | ||| ||||||||| | ||| Sbjct 13622 TAAATCTTGAGGCTCAACTTCAAAATCGCAGTCGAAACTATTAGACTAGAGTATAGTAGA 13681 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || |||||| | ||| ||| ||||||||||||||||| | | ||||||| |||| Sbjct 13682 GGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGG 13741 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| ||||| || ||| || |||| |||||||| ||| |||||| | Sbjct 13742 CGAAAGCACTTTACTGGGCTATTACTAACACTCAGAGACGAAAGCTAGGGTAGCAAATGG 13801 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG--GGGATTTA 360 |||||||||||| ||||||| ||| ||||| || ||||| ||||| ||| | Sbjct 13802 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGATGTTGAACAGATCGA 13861 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 | | ||| | ||||||||||| |||| ||||||||| Sbjct 13862 CCTGTGCAGTATCAAAGCTAACGCGTTAAGTATCCCGCCTGGG 13904 >seq38168 Length=32109 Score = 105 bits (116), Expect = 2e-20 Identities = 208/304 (68%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 20 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT 79 |||||||| |||||||||||||||||||||||| || |||||||||| ||| |||| Sbjct 4797 CCGGCTAATCTCGTGCCAGCAGCCGCGGTAATACGGGAGGGGCAAGCGTTATTCGAAATT 4856 Query 80 ACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAA 139 |||||||||| | | || ||| || | |||| |||| ||| || ||| Sbjct 4857 ACTGGGCGTACAAAATTCGTAGGTTGTAATTTAAGTTGTGTGTTAAAATTTAAAGCCTAA 4916 Query 140 CCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCAC 199 | | || ||| ||| |||||||| | || || ||||| | Sbjct 4917 CTTTAAAAGAACATACAATACTTTTTTACTAGAGTTGAATACAGAAAAGTAGAATTTTAT 4976 Query 200 GTGTAGCAGTGAAATGCGT-AGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTG 258 || || ||| || | | | | ||| || ||||| | |||| ||||||||| | | Sbjct 4977 GTTAAGGAGT-AATTACCTGAAATACATGAAGGAATATCAATAGCGAAGGCAACTTTTTA 5035 Query 259 GGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 318 | |||| |||||| || | | | ||||| || ||||||||| ||||||||||||||| || Sbjct 5036 GTATAA-ACTGACACTGAGGGATGAAAGTGTAGGGAGCAAATAGGATTAGATACCCTAGT 5094 Query 319 AGTC 322 |||| Sbjct 5095 AGTC 5098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288943696768