Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq50892 120 4e-25 seq43102 120 4e-25 seq38168 87.8 2e-15 >seq50892 Length=141790 Score = 120 bits (132), Expect = 4e-25 Identities = 169/240 (70%), Gaps = 23/240 (10%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 75947 TTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 75889 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||| |||| ||| | ||| ||| Sbjct 75888 GACCTGTGTTTTTGATAAACAGTTGCTTGGATCTTGTTATTGCAACC------------- 75842 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | || | | ||||| ||||||||||||||||||| | ||||||||||| | Sbjct 75841 --------TTACGAATAA-GGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGT 75791 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || | ||||||||| |||||||| ||||||||||||||| Sbjct 75790 TCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACCTACCCACCTGTGTCGGTT 75731 Score = 120 bits (132), Expect = 4e-25 Identities = 169/240 (70%), Gaps = 23/240 (10%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 136142 TTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 136200 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||| |||| ||| | ||| ||| Sbjct 136201 GACCTGTGTTTTTGATAAACAGTTGCTTGGATCTTGTTATTGCAACC------------- 136247 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | || | | ||||| ||||||||||||||||||| | ||||||||||| | Sbjct 136248 --------TTACGAATAA-GGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGT 136298 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || | ||||||||| |||||||| ||||||||||||||| Sbjct 136299 TCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACCTACCCACCTGTGTCGGTT 136358 >seq43102 Length=56976 Score = 120 bits (132), Expect = 4e-25 Identities = 169/240 (70%), Gaps = 23/240 (10%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| ||| ||||||||||||| || |||||||| ||||| | ||| || Sbjct 16658 TTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTAC-GACTTAGCGGA 16600 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 ||||||||||||| |||||||| |||| ||| | ||| ||| Sbjct 16599 GACCTGTGTTTTTGATAAACAGTTGCTTGGATCTTGTTATTGCAACC------------- 16553 Query 122 CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 | || | | ||||| ||||||||||||||||||| | ||||||||||| | Sbjct 16552 --------TTACGAATAA-GGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGT 16502 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 |||||| | |||| | || | ||||||||| |||||||| ||||||||||||||| Sbjct 16501 TCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACCTACCCACCTGTGTCGGTT 16442 >seq38168 Length=32109 Score = 87.8 bits (96), Expect = 2e-15 Identities = 163/237 (69%), Gaps = 13/237 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||| || ||||||||||||||||||| ||||| || || | || ||| ||||| Sbjct 3210 CTTGCAGCACCGGGCAGGCGTCAGTCTCTATACTTCTTTTTTCAAATTT-GCAGAGACCT 3152 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||| ||||| ||| |||||||| |||| ||| | || | | | || | Sbjct 3151 GTGGTTTTATTAACCAGTCGCTGTCCTCGATTTTGTGA------CGGCTTTTAAAAATAA 3098 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | ||| ||| ||||||||||||||||||| | ||||||||||| |||||| Sbjct 3097 TATTAAA-AGC-----CACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTT 3044 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 | | | || || | | | ||||| | | || | ||| ||||||||||||||| Sbjct 3043 CAATATAATTAACTCAAGCACCTTAATTTACTAAATCTGTTTACCTGTGTCGGTTTA 2987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694057649516