Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq50892 77.0 3e-12 seq43102 77.0 3e-12 seq38168 73.4 4e-11 >seq50892 Length=141790 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || ||||||||| |||||||||| ||| || || || ||| || |||| ||| ||| Sbjct 75863 GCAACTGTTTATCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGTATGGGGGCTGA 75922 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||| ||||||||| Sbjct 75923 CGCCTGCCCAGTGCCAGAAGGTTAA 75947 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || ||||||||| |||||||||| ||| || || || ||| || |||| ||| ||| Sbjct 136226 GCAACTGTTTATCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGTATGGGGGCTGA 136167 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||| ||||||||| Sbjct 136166 CGCCTGCCCAGTGCCAGAAGGTTAA 136142 >seq43102 Length=56976 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || ||||||||| |||||||||| ||| || || || ||| || |||| ||| ||| Sbjct 16574 GCAACTGTTTATCAAAAACACAGGTCTCCGCTAAGTCGTAAGACGATGTATGGGGGCTGA 16633 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||| ||||||||| Sbjct 16634 CGCCTGCCCAGTGCCAGAAGGTTAA 16658 >seq38168 Length=32109 Score = 73.4 bits (80), Expect = 4e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||| ||| ||||| ||||| ||||||||| |||| || |||||| | ||| Sbjct 3131 GCGACTGGTTAATAAAACCACAGGTCTCTGCAAATTTGAAAAAAGAAGTATAGAGACTGA 3190 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||| | ||| |||| Sbjct 3191 CGCCTGCCCGGTGCTGCAAGATTAA 3215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476564929852