Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq50892 248 2e-63 seq43102 248 2e-63 seq38168 145 2e-32 >seq50892 Length=141790 Score = 248 bits (274), Expect = 2e-63 Identities = 301/414 (73%), Gaps = 26/414 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||| | | ||||||| | ||| || Sbjct 76129 GCATCTTCACAGACAAGTCTATTTCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATT 76070 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76069 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 76010 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||| ||| ||||||| | | ||||||||| ||||||| | Sbjct 76009 TAGTTACGGCCGCCGTTCACCAGGGCTTCAGTTATCAGCTTCGCGAATGCTAACCAACTT 75950 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 ||||||||| ||||| |||||||||||| ||| |||| || ||| || || || | Sbjct 75949 CTTTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGG 75890 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||| | || | ||||| ||| | |||| Sbjct 75889 AGACCTGTGTTTTTGATAAACAGTTG-------CTTGGATCTTGTTATTGCA--ACCTTA 75839 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || | | ||| | ||||||||||||||||||| | | |||||| Sbjct 75838 CGAATAA-----------------GGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGC 75796 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| ||||| |||| || |||| |||| ||||||| | |||| Sbjct 75795 CGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACCTACCCAC 75742 Score = 248 bits (274), Expect = 2e-63 Identities = 301/414 (73%), Gaps = 26/414 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||| | | ||||||| | ||| || Sbjct 135960 GCATCTTCACAGACAAGTCTATTTCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATT 136019 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136020 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 136079 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||| ||| ||||||| | | ||||||||| ||||||| | Sbjct 136080 TAGTTACGGCCGCCGTTCACCAGGGCTTCAGTTATCAGCTTCGCGAATGCTAACCAACTT 136139 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 ||||||||| ||||| |||||||||||| ||| |||| || ||| || || || | Sbjct 136140 CTTTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGG 136199 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||| | || | ||||| ||| | |||| Sbjct 136200 AGACCTGTGTTTTTGATAAACAGTTG-------CTTGGATCTTGTTATTGCA--ACCTTA 136250 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || | | ||| | ||||||||||||||||||| | | |||||| Sbjct 136251 CGAATAA-----------------GGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGC 136293 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| ||||| |||| || |||| |||| ||||||| | |||| Sbjct 136294 CGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACCTACCCAC 136347 >seq43102 Length=56976 Score = 248 bits (274), Expect = 2e-63 Identities = 301/414 (73%), Gaps = 26/414 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| | || ||||||| ||| | | ||||||| | ||| || Sbjct 16840 GCATCTTCACAGACAAGTCTATTTCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATT 16781 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16780 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 16721 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||| ||| ||||||| | | ||||||||| ||||||| | Sbjct 16720 TAGTTACGGCCGCCGTTCACCAGGGCTTCAGTTATCAGCTTCGCGAATGCTAACCAACTT 16661 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 ||||||||| ||||| |||||||||||| ||| |||| || ||| || || || | Sbjct 16660 CTTTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGCGG 16601 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||| | || | ||||| ||| | |||| Sbjct 16600 AGACCTGTGTTTTTGATAAACAGTTG-------CTTGGATCTTGTTATTGCA--ACCTTA 16550 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || | | ||| | ||||||||||||||||||| | | |||||| Sbjct 16549 CGAATAA-----------------GGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGC 16507 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| ||||| |||| || |||| |||| ||||||| | |||| Sbjct 16506 CGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTAGTATACTCTACCTACCCAC 16453 >seq38168 Length=32109 Score = 145 bits (160), Expect = 2e-32 Identities = 194/270 (72%), Gaps = 11/270 (4%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| ||||||||||||||||| | ||||||||| | ||| Sbjct 3390 CTGCATCTTCACAGGCATTTCAATTTCACTGAGATTACATTGGAGACAGTAGGACAGTCG 3331 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||||||| |||||| | | ||| | ||||||||||||||||||| ||||||| Sbjct 3330 TTACGCCATTCATGCAGGACACCAATTAAATGCCAAGGAATTTCGCTACCTTTGGACCGT 3271 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 | |||| |||||||||||| ||| || | || ||| | || | Sbjct 3270 CAAGTTTACAGCCGCCGTTTACTGGGAATTATAATAAAAGC----------CAAAACTTT 3221 Query 191 T-CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | |||| ||| | ||||||||||||||||| | |||||| || |||| |||| Sbjct 3220 TATTTTTAATCTTGCAGCACCGGGCAGGCGTCAGTCTCTATACTTCTTTTTTCAAATTTG 3161 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||||| ||||| ||||| ||| ||||||| Sbjct 3160 CAGAGACCTGTGGTTTTATTAACCAGTCGC 3131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260158353664