Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq50892 334 2e-89 seq43102 334 2e-89 seq38168 178 3e-42 >seq50892 Length=141790 Score = 334 bits (370), Expect = 2e-89 Identities = 285/348 (82%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||||||||||| | | |||||||| ||||||| || Sbjct 76129 GCATCTTCACAGACAAGTCTATTTCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATT 76070 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76069 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 76010 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG--ATTGCTCTAACAGAT 184 ||||||||||||||||| || |||||| |||| | |||||| | |||| ||| | Sbjct 76009 TAGTTACGGCCGCCGTTCACCAGGGCTTCAGTTATCAGCTTCGCGAATGCT--AACCAAC 75952 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | ||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| Sbjct 75951 TTCTTTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGC 75892 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC 304 || ||||||||||||| |||||||| |||||| || | ||| ||| | | | Sbjct 75891 GGAGACCTGTGTTTTTGATAAACAGTTGCTTGGATCTTGTTATTGCAACCTTACGAATA- 75833 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||| ||||||||| ||||||||| ||||||||||||||||||||| Sbjct 75832 AGGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTA 75785 Score = 334 bits (370), Expect = 2e-89 Identities = 285/348 (82%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||||||||||| | | |||||||| ||||||| || Sbjct 135960 GCATCTTCACAGACAAGTCTATTTCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATT 136019 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136020 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 136079 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT--CGATTGCTCTAACAGAT 184 ||||||||||||||||| || |||||| |||| | |||| ||| || ||||| | Sbjct 136080 TAGTTACGGCCGCCGTTCACCAGGGCTTCAGTTATCAGCTTCGCGAATG--CTAACCAAC 136137 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | ||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| Sbjct 136138 TTCTTTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGC 136197 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC 304 || ||||||||||||| |||||||| |||||| || | ||| ||| | | | Sbjct 136198 GGAGACCTGTGTTTTTGATAAACAGTTGCTTGGATCTTGTTATTGCAACCTTACGAATA- 136256 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||| ||||||||| ||||||||| ||||||||||||||||||||| Sbjct 136257 AGGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTA 136304 >seq43102 Length=56976 Score = 334 bits (370), Expect = 2e-89 Identities = 285/348 (82%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||||||||||| | | |||||||| ||||||| || Sbjct 16840 GCATCTTCACAGACAAGTCTATTTCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATT 16781 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16780 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 16721 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG--ATTGCTCTAACAGAT 184 ||||||||||||||||| || |||||| |||| | |||||| | |||| ||| | Sbjct 16720 TAGTTACGGCCGCCGTTCACCAGGGCTTCAGTTATCAGCTTCGCGAATGCT--AACCAAC 16663 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | ||||||||| |||| |||||||||||||| || |||||||||||| ||||||||| Sbjct 16662 TTCTTTAACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATCGTCTTACGACTTAGC 16603 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC 304 || ||||||||||||| |||||||| |||||| || | ||| ||| | | | Sbjct 16602 GGAGACCTGTGTTTTTGATAAACAGTTGCTTGGATCTTGTTATTGCAACCTTACGAATA- 16544 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||| ||||||||| ||||||||| ||||||||||||||||||||| Sbjct 16543 AGGCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTTA 16496 >seq38168 Length=32109 Score = 178 bits (196), Expect = 3e-42 Identities = 261/366 (71%), Gaps = 24/366 (7%) Strand=Plus/Minus Query 4 CCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATC 63 || |||||||||| || ||| ||||||||| ||| || | |||||||| | || Sbjct 3391 CCTGCATCTTCACAGGCATTTCAATTTCACTGAGATTACATTGGAGACAGTAGGACAGTC 3332 Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123 |||||||| ||| ||| || | | ||| | ||||||||||||||||||| |||||| Sbjct 3331 GTTACGCCATTCATGCAGGACACCAATTAAATGCCAAGGAATTTCGCTACCTTTGGACCG 3272 Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGA 183 | | |||| |||||||||||||||| ||| | | || | | ||| Sbjct 3271 TCAAGTTTACAGCCGCCGTTTACTGGGAATTATAATAAAAGC--CAA-------AACTTT 3221 Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 | |||| ||| |||||||||||||||||||| |||||| || | || | | || | Sbjct 3220 TATTTTTAATCTTGCAGCACCGGGCAGGCGTCAGTCTCTATACTTCTTTTTTCAAATTTG 3161 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT--ATTCTCTG-CGGCCTGT--- 297 |||| ||||||| |||| ||| |||||||| | ||| ||| | || |||| | | Sbjct 3160 CAGAGACCTGTGGTTTTATTAACCAGTCGCT--GTCCTCGATTTTGTGACGGCTTTTAAA 3103 Query 298 -----CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || | || ||| ||||||||| ||||||||| |||||||||||||||||||| Sbjct 3102 AATAATATTAAAAGCCACTCCTTCTCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTT- 3044 Query 353 ACAATA 358 ||||| Sbjct 3043 -CAATA 3039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061859323392