Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq50892 426 5e-117 seq43102 426 5e-117 seq38168 105 2e-20 >seq50892 Length=141790 Score = 426 bits (472), Expect = 5e-117 Identities = 394/493 (80%), Gaps = 16/493 (3%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 73203 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 73262 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC-CTCT-AGA 124 |||||||| ||||||||||||||||||||| ||||||| | || || | | | Sbjct 73263 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGATACGAATTTCTTTGAAA 73322 Query 125 GATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184 || ||| | || || || || | ||||||| ||||||| ||||||||||||| Sbjct 73323 GA-AGAAAGTGCCGTTT---GGAACGTATACACAGGTGGTGCATGGCTGTCGTCAGCTCG 73378 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 73379 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTAGTTGCC--- 73435 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || || ||||||| |||||| ||| | |||||||||||||||||||| |||| Sbjct 73436 -----GTATGGAACTCTAAAAAGACTGCTGGTTATAAACCGGAGGAAGGTGGGGATGACG 73490 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 |||| ||| ||||||||||| |||||||||||||||||||| ||| | | |||| | Sbjct 73491 TCAAGTCAGCATGCCCCTTACACCCTGGGCTACACACGTGCTACATTGGGCGAGACAATG 73550 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 | || || | |||| | | ||| ||| | ||||| | ||||| |||||||||||||| Sbjct 73551 AGATGCAAACCTGCGAAGGCTAGCTAAT-CTATAAACTCGTTCTAAGTTCGGATTGTAGG 73609 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483 |||||||||| || |||||| |||||||||||||||||| | ||||| || | |||| Sbjct 73610 CTGCAACTCGCCTGCATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTATACAGCGGT 73669 Query 484 GAATACGTTCCCG 496 |||| |||||||| Sbjct 73670 GAATTCGTTCCCG 73682 Score = 426 bits (472), Expect = 5e-117 Identities = 394/493 (80%), Gaps = 16/493 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 138886 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 138827 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC-CTCT-AGA 124 |||||||| ||||||||||||||||||||| ||||||| | || || | | | Sbjct 138826 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGATACGAATTTCTTTGAAA 138767 Query 125 GATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184 || ||| | || || || || | ||||||| ||||||| ||||||||||||| Sbjct 138766 GA-AGAAAGTGCCGTTT---GGAACGTATACACAGGTGGTGCATGGCTGTCGTCAGCTCG 138711 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 138710 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTAGTTGCC--- 138654 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || || ||||||| |||||| ||| | |||||||||||||||||||| |||| Sbjct 138653 -----GTATGGAACTCTAAAAAGACTGCTGGTTATAAACCGGAGGAAGGTGGGGATGACG 138599 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 |||| ||| ||||||||||| |||||||||||||||||||| ||| | | |||| | Sbjct 138598 TCAAGTCAGCATGCCCCTTACACCCTGGGCTACACACGTGCTACATTGGGCGAGACAATG 138539 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 | || || | |||| | | ||| ||| | ||||| | ||||| |||||||||||||| Sbjct 138538 AGATGCAAACCTGCGAAGGCTAGCTAAT-CTATAAACTCGTTCTAAGTTCGGATTGTAGG 138480 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483 |||||||||| || |||||| |||||||||||||||||| | ||||| || | |||| Sbjct 138479 CTGCAACTCGCCTGCATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTATACAGCGGT 138420 Query 484 GAATACGTTCCCG 496 |||| |||||||| Sbjct 138419 GAATTCGTTCCCG 138407 >seq43102 Length=56976 Score = 426 bits (472), Expect = 5e-117 Identities = 394/493 (80%), Gaps = 16/493 (3%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 13914 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 13973 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC-CTCT-AGA 124 |||||||| ||||||||||||||||||||| ||||||| | || || | | | Sbjct 13974 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGATACGAATTTCTTTGAAA 14033 Query 125 GATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184 || ||| | || || || || | ||||||| ||||||| ||||||||||||| Sbjct 14034 GA-AGAAAGTGCCGTTT---GGAACGTATACACAGGTGGTGCATGGCTGTCGTCAGCTCG 14089 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 14090 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTAGTTGCC--- 14146 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || || ||||||| |||||| ||| | |||||||||||||||||||| |||| Sbjct 14147 -----GTATGGAACTCTAAAAAGACTGCTGGTTATAAACCGGAGGAAGGTGGGGATGACG 14201 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 |||| ||| ||||||||||| |||||||||||||||||||| ||| | | |||| | Sbjct 14202 TCAAGTCAGCATGCCCCTTACACCCTGGGCTACACACGTGCTACATTGGGCGAGACAATG 14261 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 | || || | |||| | | ||| ||| | ||||| | ||||| |||||||||||||| Sbjct 14262 AGATGCAAACCTGCGAAGGCTAGCTAAT-CTATAAACTCGTTCTAAGTTCGGATTGTAGG 14320 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483 |||||||||| || |||||| |||||||||||||||||| | ||||| || | |||| Sbjct 14321 CTGCAACTCGCCTGCATGAAGGTGGAATCGCTAGTAATCGCTGGTCAGCTATACAGCGGT 14380 Query 484 GAATACGTTCCCG 496 |||| |||||||| Sbjct 14381 GAATTCGTTCCCG 14393 >seq38168 Length=32109 Score = 105 bits (116), Expect = 2e-20 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 285 GGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTG 344 ||| ||||||| | | | ||||| ||| || ||||||| |||||||| ||||||| Sbjct 5460 GGAAGAAGGTGAGAATAAAGTCAAGTCACTGTGGCCCTTATAGGTTGGGCTATACACGTG 5519 Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTG 404 ||||||||| | ||||| ||| | ||| | | | || |||| | ||| || Sbjct 5520 CTACAATGGGAATGACAAAAAGCAACAAAAATGAAAATTTTAGTTAATCTTAAAAAATT- 5578 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 || ||||| ||||| || |||||||||| | || ||| ||||||| | |||||||| Sbjct 5579 CCCTTAGTTCAGATTGCAGACTGCAACTCGTTTGCATAAAGATGGAATCACAAGTAATCG 5638 Query 465 TAGATCAGCATGCTACGGTGAATACGTTCC 494 | ||||| | | | ||||||||| || || Sbjct 5639 CAAATCAGAACGTTGCGGTGAATAAGTACC 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503234584320