Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq25219 266 5e-69 seq24965 100 5e-19 >seq25219 Length=11430 Score = 266 bits (294), Expect = 5e-69 Identities = 209/247 (85%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 6223 TCATTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCGC 6164 Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 | ||||| | | || | || | | ||||||||||||||| | |||| | | || Sbjct 6163 CATCTTCCTTCGTCTTGTAGAACGAACGTCCCTCTAAGAAGCTCTCG-CCAATGAAATTC 6105 Query 135 GATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | |||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 6104 ATTCGCGGAACTATTTAGCAGGCGGCGGTCTCGTTCGTTAACGGAATTAACCAGACAAAT 6045 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 6044 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAACTCTCA 5985 Query 252 ATCTGTC 258 ||||||| Sbjct 5984 ATCTGTC 5978 >seq24965 Length=558 Score = 100 bits (110), Expect = 5e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 489 TCATTGTAACGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCGC 548 Query 76 AAACTTCC 83 | ||||| Sbjct 549 CATCTTCC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796407164652