Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq25219 354 1e-95 seq17554 320 3e-85 seq50892 73.4 7e-11 seq43102 73.4 7e-11 >seq25219 Length=11430 Score = 354 bits (392), Expect = 1e-95 Identities = 256/295 (87%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||||||| | ||||| | || | || |||||||||||||||||||||||||||| Sbjct 10591 TACTAAGCTGGATTACTGTCAGGACAACAAATTCATCAGTAGGGTAAAACTAACCTGTCT 10532 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 10531 CACGACGGTCTAAACCCAGCTCACGTTCCCTGTTAGTGGGTGAACAATCCTACACTTGGT 10472 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 || |||||| | ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 10471 GACTTCTGCGACACAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCT 10412 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 10411 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGC 10352 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| | |||||||||||||||||||| |||| ||||||||||| Sbjct 10351 TTCAAATTCTAAAAACCTAAAGGATCGATAGGCCACGGTTTCCCGGTTTGTATTC 10297 >seq17554 Length=762 Score = 320 bits (354), Expect = 3e-85 Identities = 218/245 (89%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 TAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTTAGTGGGTGAACAATCC 60 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 || ||| || |||||| | ||||||||||||||||||||||||| ||||||||| Sbjct 61 TACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAG 120 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA 180 Query 229 CACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTG 288 |||||||||| ||||||| | |||||||||||||||||||| |||| |||||| Sbjct 181 CACCTCTAGCTTCAAATTCTAAAAACCTAAAGGATCGATAGGCCACGGTTTCCCGGTTTG 240 Query 289 TATTC 293 ||||| Sbjct 241 TATTC 245 >seq50892 Length=141790 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || || |||| ||||| ||||| Sbjct 76696 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACC 76637 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 76636 CTTGGGACGTACTACCGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 76580 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 76579 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 76525 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || || |||| ||||| ||||| Sbjct 135393 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACC 135452 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 135453 CTTGGGACGTACTACCGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 135509 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 135510 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 135564 >seq43102 Length=56976 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || || |||| ||||| ||||| Sbjct 17407 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACC 17348 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || | | | || | | ||| || ||||||||||||| | |||| | Sbjct 17347 CTTGGGACGTACTACCGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 17291 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | |||| ||||||||| ||||||||| Sbjct 17290 CCCGTCGATGTGAACTCTTGGGGGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 17236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853965178752