Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq50892 214 4e-53 seq43102 214 4e-53 >seq50892 Length=141790 Score = 214 bits (236), Expect = 4e-53 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 76316 GGACAGTTTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAACGGTAACGGAGGCG 76375 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| | |||| | || | |||| | | | |||| ||||||| |||| | Sbjct 76376 TACAAAGGTTTCCTCTGAACGGTTAGAAATCGTATCTAGAGTGTAAAGGCATAAGGAAGC 76435 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || ||| |||||| |||||||||||||||||| |||| ||||| | |||| Sbjct 76436 TTGACTGTGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGTCTTAGTGATCTGACGGTA 76495 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| ||||||| ||| ||||||||||| ||| || |||||| Sbjct 76496 CTGAGTGGAAAGGCCGTCACTCAACGGATAAAAGTTACTCTAGGGATA 76543 Score = 214 bits (236), Expect = 4e-53 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 135773 GGACAGTTTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAACGGTAACGGAGGCG 135714 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| | |||| | || | |||| | | | |||| ||||||| |||| | Sbjct 135713 TACAAAGGTTTCCTCTGAACGGTTAGAAATCGTATCTAGAGTGTAAAGGCATAAGGAAGC 135654 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || ||| |||||| |||||||||||||||||| |||| ||||| | |||| Sbjct 135653 TTGACTGTGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGTCTTAGTGATCTGACGGTA 135594 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| ||||||| ||| ||||||||||| ||| || |||||| Sbjct 135593 CTGAGTGGAAAGGCCGTCACTCAACGGATAAAAGTTACTCTAGGGATA 135546 >seq43102 Length=56976 Score = 214 bits (236), Expect = 4e-53 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 17027 GGACAGTTTCAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAACGGTAACGGAGGCG 17086 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| | |||| | || | |||| | | | |||| ||||||| |||| | Sbjct 17087 TACAAAGGTTTCCTCTGAACGGTTAGAAATCGTATCTAGAGTGTAAAGGCATAAGGAAGC 17146 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || ||| |||||| |||||||||||||||||| |||| ||||| | |||| Sbjct 17147 TTGACTGTGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGTCTTAGTGATCTGACGGTA 17206 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||| ||||||| ||| ||||||||||| ||| || |||||| Sbjct 17207 CTGAGTGGAAAGGCCGTCACTCAACGGATAAAAGTTACTCTAGGGATA 17254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981900036992