Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq50892 237 3e-60 seq43102 237 3e-60 seq38168 104 5e-20 >seq50892 Length=141790 Score = 237 bits (262), Expect = 3e-60 Identities = 257/335 (77%), Gaps = 13/335 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || | |||| | | ||||||| |||| || ||||||||||||||| Sbjct 72759 TTTACAACCCATAGGCAGTCTTCC-CTCACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 72702 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72701 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 72642 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||| |||||||| ||||| ||| ||||||||||||||| ||| |||||| || Sbjct 72641 GTGTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGCCTTGGTAAGCTCTTACCTTAC 72582 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||||||| | | ||| ||| | ||| | || ||| ||| Sbjct 72581 CAACAAGCTAATCAGCCGCGAGCTTCTCTTCTGGCGGA-----TAAAAATCC----ATTT 72531 Query 242 CTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | | ||| | | |||| ||||||||| | ||||||| | |||||||||| | | || Sbjct 72530 CACTAAGTAAG-CATATGGGGTATTAGCATTCGTTTCCAATTGTTATCCCCCTCCAAAAG 72472 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| |||| | | ||||||||||||||||| || Sbjct 72471 GCAAATTCTCACGTGTTACTCACCCGTCCGCCACT 72437 Score = 237 bits (262), Expect = 3e-60 Identities = 257/335 (77%), Gaps = 13/335 (4%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || | |||| | | ||||||| |||| || ||||||||||||||| Sbjct 139330 TTTACAACCCATAGGCAGTCTTCC-CTCACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 139387 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139388 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 139447 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||| |||||||| ||||| ||| ||||||||||||||| ||| |||||| || Sbjct 139448 GTGTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGCCTTGGTAAGCTCTTACCTTAC 139507 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||||||| | | ||| ||| | ||| | || ||| ||| Sbjct 139508 CAACAAGCTAATCAGCCGCGAGCTTCTCTTCTGGCGGA-----TAAAAATCC----ATTT 139558 Query 242 CTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | | ||| | | |||| ||||||||| | ||||||| | |||||||||| | | || Sbjct 139559 CACTAAGTAAG-CATATGGGGTATTAGCATTCGTTTCCAATTGTTATCCCCCTCCAAAAG 139617 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| |||| | | ||||||||||||||||| || Sbjct 139618 GCAAATTCTCACGTGTTACTCACCCGTCCGCCACT 139652 >seq43102 Length=56976 Score = 237 bits (262), Expect = 3e-60 Identities = 257/335 (77%), Gaps = 13/335 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || | |||| | | ||||||| |||| || ||||||||||||||| Sbjct 13470 TTTACAACCCATAGGCAGTCTTCC-CTCACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 13413 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13412 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 13353 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||| |||||||| ||||| ||| ||||||||||||||| ||| |||||| || Sbjct 13352 GTGTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGCCTTGGTAAGCTCTTACCTTAC 13293 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||| |||||||| | | ||| ||| | ||| | || ||| ||| Sbjct 13292 CAACAAGCTAATCAGCCGCGAGCTTCTCTTCTGGCGGA-----TAAAAATCC----ATTT 13242 Query 242 CTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | | ||| | | |||| ||||||||| | ||||||| | |||||||||| | | || Sbjct 13241 CACTAAGTAAG-CATATGGGGTATTAGCATTCGTTTCCAATTGTTATCCCCCTCCAAAAG 13183 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| |||| | | ||||||||||||||||| || Sbjct 13182 GCAAATTCTCACGTGTTACTCACCCGTCCGCCACT 13148 >seq38168 Length=32109 Score = 104 bits (114), Expect = 5e-20 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| |||||| ||||||||||||||| |||||||| || ||| || Sbjct 4707 GCTGGATCAAACTTTCGTTAATTGTCCAATATTCCTCACTGCTGGCTAAAATAGC---CT 4651 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 ||||| |||||||||||||||||| || || ||||| || ||| || |||| | | Sbjct 4650 GGACCTTGTCTCAGTTCCAGTGTGGTTGCACACCCTCTTAGGCCAACTAAAGATCATAGG 4591 Query 161 CTTGGTGAGCCATTACCT-CACCAACTAGCTAATC 194 ||||||| | ||| | ||||||||| |||||| Sbjct 4590 CTTGGTGCACTTTTATTTACACCAACTACCTAATC 4556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071454437760