Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq50892 282 2e-73 seq43102 282 2e-73 seq38168 89.7 2e-15 >seq50892 Length=141790 Score = 282 bits (312), Expect = 2e-73 Identities = 349/470 (74%), Gaps = 23/470 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| || ||| |||||||||||||||||||||| | | | || ||||||| ||||| Sbjct 74970 CGCTGCGCCAAAACGCATTTCGGGGAGAACCAGCTAGCTCCGAATTCGATTGGCATTTCA 74911 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | ||| |||| |||||||||| | Sbjct 74910 CCCCTAACCACAATTCATCCGGTGATTTTTCAACATCAGTCGGTTGGGTCCTCCACTTAG 74851 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | ||||| ||||||||||| ||||| ||||||| | |||||||| | || || Sbjct 74850 TATTACCTAAGCTTCAACCTGATCATGGTTAGATCATCCGGGTTCGGGTCTATAAATAGT 74791 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC---GGGTTAA 370 | || ||||||||||| | ||||||||| || |||| | | | |||| Sbjct 74790 G----ACAAACGCCCTATTCAGGCTCGCTTTCACTGTGGCTTCGGTATTCTCTACCTTAA 74735 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| | ||| || | || |||| |||||||||||||| |||||||| |||| Sbjct 74734 CCT---GCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCA-----G 74683 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | || | || |||| || | ||||| | ||||||||| || || |||||| Sbjct 74682 ACGTTTTAG--TCGTC--CTCCTACTGCTTGTAAGTTTATGGTTTCATGTTCT-TTTCAC 74628 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| || ||||| ||||||||||||||||||||||||| | | |||||||||| | Sbjct 74627 TCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGTTTCACTATCGGTCATTCA 74568 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| ||||||| |||| |||||||| |||||||||||| ||||||| Sbjct 74567 GGAATATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGAATTTCA 74518 Score = 282 bits (312), Expect = 2e-73 Identities = 349/470 (74%), Gaps = 23/470 (5%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| || ||| |||||||||||||||||||||| | | | || ||||||| ||||| Sbjct 137119 CGCTGCGCCAAAACGCATTTCGGGGAGAACCAGCTAGCTCCGAATTCGATTGGCATTTCA 137178 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | ||| |||| |||||||||| | Sbjct 137179 CCCCTAACCACAATTCATCCGGTGATTTTTCAACATCAGTCGGTTGGGTCCTCCACTTAG 137238 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | ||||| ||||||||||| ||||| ||||||| | |||||||| | || || Sbjct 137239 TATTACCTAAGCTTCAACCTGATCATGGTTAGATCATCCGGGTTCGGGTCTATAAATAGT 137298 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC---GGGTTAA 370 | || ||||||||||| | ||||||||| || |||| | | | |||| Sbjct 137299 G----ACAAACGCCCTATTCAGGCTCGCTTTCACTGTGGCTTCGGTATTCTCTACCTTAA 137354 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| | ||| || | || |||| |||||||||||||| |||||||| |||| Sbjct 137355 CCT---GCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCA-----G 137406 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | || | || |||| || | ||||| | ||||||||| || || |||||| Sbjct 137407 ACGTTTTAG--TCGTC--CTCCTACTGCTTGTAAGTTTATGGTTTCATGTTCT-TTTCAC 137461 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| || ||||| ||||||||||||||||||||||||| | | |||||||||| | Sbjct 137462 TCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGTTTCACTATCGGTCATTCA 137521 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| ||||||| |||| |||||||| |||||||||||| ||||||| Sbjct 137522 GGAATATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGAATTTCA 137571 >seq43102 Length=56976 Score = 282 bits (312), Expect = 2e-73 Identities = 349/470 (74%), Gaps = 23/470 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| || ||| |||||||||||||||||||||| | | | || ||||||| ||||| Sbjct 15681 CGCTGCGCCAAAACGCATTTCGGGGAGAACCAGCTAGCTCCGAATTCGATTGGCATTTCA 15622 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | ||| |||| |||||||||| | Sbjct 15621 CCCCTAACCACAATTCATCCGGTGATTTTTCAACATCAGTCGGTTGGGTCCTCCACTTAG 15562 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | ||||| ||||||||||| ||||| ||||||| | |||||||| | || || Sbjct 15561 TATTACCTAAGCTTCAACCTGATCATGGTTAGATCATCCGGGTTCGGGTCTATAAATAGT 15502 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC---GGGTTAA 370 | || ||||||||||| | ||||||||| || |||| | | | |||| Sbjct 15501 G----ACAAACGCCCTATTCAGGCTCGCTTTCACTGTGGCTTCGGTATTCTCTACCTTAA 15446 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| | ||| || | || |||| |||||||||||||| |||||||| |||| Sbjct 15445 CCT---GCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCA-----G 15394 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | || | || |||| || | ||||| | ||||||||| || || |||||| Sbjct 15393 ACGTTTTAG--TCGTC--CTCCTACTGCTTGTAAGTTTATGGTTTCATGTTCT-TTTCAC 15339 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| || ||||| ||||||||||||||||||||||||| | | |||||||||| | Sbjct 15338 TCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTGTTTCACTATCGGTCATTCA 15279 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| ||||||| |||| |||||||| |||||||||||| ||||||| Sbjct 15278 GGAATATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGAATTTCA 15229 >seq38168 Length=32109 Score = 89.7 bits (98), Expect = 2e-15 Identities = 127/177 (72%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| || ||||| |||||| || ||||||||||| | ||||||| || ||||||| Sbjct 2331 ACGCTCTACTTAAATAGATTTCGCAGAAAACCAGCTATCTCTAAGTTTGTTTAGCCTTTC 2272 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 || |||| ||||| ||||| | | ||| | || || | ||||| |||| || Sbjct 2271 ACTCCTAACCACAAATCATCTCAGTATTTTGCCACATACACGAGTTCGATCCTTCAATAA 2212 Query 255 GTCTTACCCGC----GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | ||| |||| ||||| ||| ||||| |||||||||| | ||||||| || Sbjct 2211 GCGTTA-CCGCTTTAAATTCAATCTGTTCATGGTTAGATCACTTAGTTTCGGGTTTT 2156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816674987008