Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq50892 246 8e-63 seq43102 246 8e-63 >seq50892 Length=141790 Score = 246 bits (272), Expect = 8e-63 Identities = 316/416 (76%), Gaps = 20/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||| | | ||||||||| |||||||| ||||||||| |||||| || Sbjct 74903 CCACAATTCAT-CCGGTGA-TTTTTCAACATCAGTCGGTTGGGTCCTCCACTTAGTA-TT 74847 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| ||||||| ||| || |||||| |||| || ||||||||| || Sbjct 74846 ACCTAAGCTT-CAACCTGATCAT-GGTTAGATCATCCGGGTT-CGGGTCTATAAAT-AGT 74791 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT-- 186 ||| | |||||||| | || |||||||| | || | || | ||||| | | ||| Sbjct 74790 GACAA-ACGCCCTATTCAGGCTCGCTTT-CACTGTGGCTTCGGTATTCTCT--ACCTTAA 74735 Query 187 --TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 ||||||| ||||||||| | | |||| | ||| ||| ||||||||| | | Sbjct 74734 CCTGCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGACGTTTTA 74675 Query 245 GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || | | ||| |||||||||| | || ||||||| | ||| ||||||||||||| |||| Sbjct 74674 GTCGTCCTCCTACTGCTTGTAAGTTTATGGTTTCATGTTCT-TTTCACTCCCCTC-CCGG 74617 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| |||||||||||||||||| |||||||||||||| |||| | ||||||| Sbjct 74616 GGTTCTTTTCACCTTTCCCTCACGGTACTGTTTCACTATCGGTCATTCAGGAATATTTAG 74557 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| |||| |||||| | || ||||| || | |||| |||||||| | ||||| Sbjct 74556 CCTTACGAGG-TGGTCCTCGCAGATTCACACGGAATTTCACGTGCTCCATGCTACT 74502 Score = 246 bits (272), Expect = 8e-63 Identities = 316/416 (76%), Gaps = 20/416 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||| | | ||||||||| |||||||| ||||||||| |||||| || Sbjct 137186 CCACAATTCAT-CCGGTGA-TTTTTCAACATCAGTCGGTTGGGTCCTCCACTTAGTA-TT 137242 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| ||||||| ||| || |||||| |||| || ||||||||| || Sbjct 137243 ACCTAAGCTT-CAACCTGATCAT-GGTTAGATCATCCGGGTT-CGGGTCTATAAAT-AGT 137298 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT-- 186 ||| | |||||||| | || |||||||| | || | || | ||||| | | ||| Sbjct 137299 GACAA-ACGCCCTATTCAGGCTCGCTTT-CACTGTGGCTTCGGTATTCTCT--ACCTTAA 137354 Query 187 --TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 ||||||| ||||||||| | | |||| | ||| ||| ||||||||| | | Sbjct 137355 CCTGCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGACGTTTTA 137414 Query 245 GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || | | ||| |||||||||| | || ||||||| | ||| ||||||||||||| |||| Sbjct 137415 GTCGTCCTCCTACTGCTTGTAAGTTTATGGTTTCATGTTCT-TTTCACTCCCCTC-CCGG 137472 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| |||||||||||||||||| |||||||||||||| |||| | ||||||| Sbjct 137473 GGTTCTTTTCACCTTTCCCTCACGGTACTGTTTCACTATCGGTCATTCAGGAATATTTAG 137532 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| |||| |||||| | || ||||| || | |||| |||||||| | ||||| Sbjct 137533 CCTTACGAGG-TGGTCCTCGCAGATTCACACGGAATTTCACGTGCTCCATGCTACT 137587 >seq43102 Length=56976 Score = 246 bits (272), Expect = 8e-63 Identities = 316/416 (76%), Gaps = 20/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||| | | ||||||||| |||||||| ||||||||| |||||| || Sbjct 15614 CCACAATTCAT-CCGGTGA-TTTTTCAACATCAGTCGGTTGGGTCCTCCACTTAGTA-TT 15558 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| ||||||| ||| || |||||| |||| || ||||||||| || Sbjct 15557 ACCTAAGCTT-CAACCTGATCAT-GGTTAGATCATCCGGGTT-CGGGTCTATAAAT-AGT 15502 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT-- 186 ||| | |||||||| | || |||||||| | || | || | ||||| | | ||| Sbjct 15501 GACAA-ACGCCCTATTCAGGCTCGCTTT-CACTGTGGCTTCGGTATTCTCT--ACCTTAA 15446 Query 187 --TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 ||||||| ||||||||| | | |||| | ||| ||| ||||||||| | | Sbjct 15445 CCTGCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCAGACGTTTTA 15386 Query 245 GTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || | | ||| |||||||||| | || ||||||| | ||| ||||||||||||| |||| Sbjct 15385 GTCGTCCTCCTACTGCTTGTAAGTTTATGGTTTCATGTTCT-TTTCACTCCCCTC-CCGG 15328 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| |||||||||||||||||| |||||||||||||| |||| | ||||||| Sbjct 15327 GGTTCTTTTCACCTTTCCCTCACGGTACTGTTTCACTATCGGTCATTCAGGAATATTTAG 15268 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| |||| |||||| | || ||||| || | |||| |||||||| | ||||| Sbjct 15267 CCTTACGAGG-TGGTCCTCGCAGATTCACACGGAATTTCACGTGCTCCATGCTACT 15213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240968124928