Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq50892 210 4e-52 seq43102 210 4e-52 seq38168 86.0 1e-14 seq29041 82.4 2e-13 >seq50892 Length=141790 Score = 210 bits (232), Expect = 4e-52 Identities = 230/304 (76%), Gaps = 20/304 (7%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 72722 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 72663 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||| | | || ||||||| || | ||| |||||||| Sbjct 72662 GGACCGTGTCTCAGTTCCAGTGTGTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGC 72603 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 |||||| ||| ||| || |||||| | |||||| ||||||||| |||| || ||| Sbjct 72602 CTTGGTAAGCTCTTACCTTACCAACAAGCTAATCAGCCGCGAGCTTCTCTTCTGGCGGAT 72543 Query 186 AAA---TCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGT 242 ||| | || | ||| | | || |||| ||||||||| ||||| Sbjct 72542 AAAAATCCATTTCACTAAGTAAG----CA-----------TATGGGGTATTAGCATTCGT 72498 Query 243 TTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCA 302 |||||| ||||| || ||| ||||||| || |||||||||||||||||||||||||| Sbjct 72497 TTCCAATTGTTATCCCCCTCCAAAAGGCAAATT-CTCACGTGTTACTCACCCGTCCGCCA 72439 Query 303 CTAA 306 |||| Sbjct 72438 CTAA 72435 Score = 210 bits (232), Expect = 4e-52 Identities = 230/304 (76%), Gaps = 20/304 (7%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 139367 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 139426 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||| | | || ||||||| || | ||| |||||||| Sbjct 139427 GGACCGTGTCTCAGTTCCAGTGTGTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGC 139486 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 |||||| ||| ||| || |||||| | |||||| ||||||||| |||| || ||| Sbjct 139487 CTTGGTAAGCTCTTACCTTACCAACAAGCTAATCAGCCGCGAGCTTCTCTTCTGGCGGAT 139546 Query 186 AAA---TCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGT 242 ||| | || | ||| | | || |||| ||||||||| ||||| Sbjct 139547 AAAAATCCATTTCACTAAGTAAG----CA-----------TATGGGGTATTAGCATTCGT 139591 Query 243 TTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCA 302 |||||| ||||| || ||| ||||||| || |||||||||||||||||||||||||| Sbjct 139592 TTCCAATTGTTATCCCCCTCCAAAAGGCAAATT-CTCACGTGTTACTCACCCGTCCGCCA 139650 Query 303 CTAA 306 |||| Sbjct 139651 CTAA 139654 >seq43102 Length=56976 Score = 210 bits (232), Expect = 4e-52 Identities = 230/304 (76%), Gaps = 20/304 (7%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 13433 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 13374 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||| | | || ||||||| || | ||| |||||||| Sbjct 13373 GGACCGTGTCTCAGTTCCAGTGTGTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGC 13314 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 |||||| ||| ||| || |||||| | |||||| ||||||||| |||| || ||| Sbjct 13313 CTTGGTAAGCTCTTACCTTACCAACAAGCTAATCAGCCGCGAGCTTCTCTTCTGGCGGAT 13254 Query 186 AAA---TCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGT 242 ||| | || | ||| | | || |||| ||||||||| ||||| Sbjct 13253 AAAAATCCATTTCACTAAGTAAG----CA-----------TATGGGGTATTAGCATTCGT 13209 Query 243 TTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCA 302 |||||| ||||| || ||| ||||||| || |||||||||||||||||||||||||| Sbjct 13208 TTCCAATTGTTATCCCCCTCCAAAAGGCAAATT-CTCACGTGTTACTCACCCGTCCGCCA 13150 Query 303 CTAA 306 |||| Sbjct 13149 CTAA 13146 >seq38168 Length=32109 Score = 86.0 bits (94), Expect = 1e-14 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 27 ATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 86 ||||| |||||| || |||||||| || ||| |||| || ||||||||| ||| Sbjct 4687 ATTGTCCAATATTCCTCACTGCTGGCTAAAATAGC---CTGGACCTTGTCTCAGTTCCAG 4631 Query 87 TGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCT-C 145 ||||| | || ||||| || || ||| |||| | ||||||||| || |||| | | Sbjct 4630 TGTGGTTGCACACCCTCTTAGGCCAACTAAAGATCATAGGCTTGGTGCACTTTTATTTAC 4571 Query 146 ACCAACTACCTAATC 160 ||||||||||||||| Sbjct 4570 ACCAACTACCTAATC 4556 >seq29041 Length=311 Score = 82.4 bits (90), Expect = 2e-13 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 227 CGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTT 286 |||||||||| |||||||||| ||||| || ||| ||||||| || |||||||||| Sbjct 186 CGGTATTAGCATTCGTTTCCATT-GTTATCCCCCTCCAAAAGGCAAATT-CTCACGTGTT 243 Query 287 ACTCACCCGTCCGCCACTA 305 |||||||||||||||| || Sbjct 244 ACTCACCCGTCCGCCAGTA 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997891894272