Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq50892 192 1e-46 seq43102 192 1e-46 >seq50892 Length=141790 Score = 192 bits (212), Expect = 1e-46 Identities = 290/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||| |||||||| || |||| |||| || ||| | | | | Sbjct 75502 CGACTACGCTTTTCAGCCTGGCCTTAGGTCCTGACTTACCCTCCGCGGACGAGCCTTCCG 75443 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 75442 GAGGAAACCTTGGGTTTTCGGGGTATAGGATTCTCACCTATATTTTCGTTACTCAAGCCG 75383 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTC-ACCACTGACA 176 |||||||||| || || |||| || | | || | |||| ||| ||| Sbjct 75382 ACATTCTCACTTCTGCTTCG--TCCAT-ACCCGCTTACGCTAATACTTCGACCTACAACA 75326 Query 177 CGACGCTCCCCTACCCAACCACACAGGT---TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | | | | | | ||||| |||||| || ||||| || Sbjct 75325 GAACGCTCCCCTACCGATATATAAATATATATCGCACAGTTTCGGCAAATTACTTAGTCC 75266 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 | |||||| ||||||| | | ||| || ||||||||||||||||||||||| ||||| Sbjct 75265 CA--TACATTTTCGGCGCAGGTTTACTCGATCAGTGAGCTATTACGCACTCTTTAAAGGA 75208 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 | |||||||| |||| ||||||||| |||| |||||| |||| |||||| ||||| || Sbjct 75207 TTGCTGCTTCTAAGCAAACCTCCTGATTGTTTACGCACTCCCACCTCCTTTACCACTTAG 75148 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | ||| |||||||| ||| || |||||||||||||||||| Sbjct 75147 CAATTATTTAAGGGCCTTAACTGGTGCTCTGGGCTGTTTCCCTCT 75103 Score = 192 bits (212), Expect = 1e-46 Identities = 290/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||| |||||||| || |||| |||| || ||| | | | | Sbjct 136587 CGACTACGCTTTTCAGCCTGGCCTTAGGTCCTGACTTACCCTCCGCGGACGAGCCTTCCG 136646 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 136647 GAGGAAACCTTGGGTTTTCGGGGTATAGGATTCTCACCTATATTTTCGTTACTCAAGCCG 136706 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTC-ACCACTGACA 176 |||||||||| || || |||| || | | || | |||| ||| ||| Sbjct 136707 ACATTCTCACTTCTGCTTCG--TCCAT-ACCCGCTTACGCTAATACTTCGACCTACAACA 136763 Query 177 CGACGCTCCCCTACCCAACCACACAGGT---TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | | | | | | ||||| |||||| || ||||| || Sbjct 136764 GAACGCTCCCCTACCGATATATAAATATATATCGCACAGTTTCGGCAAATTACTTAGTCC 136823 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 | |||||| ||||||| | | ||| || ||||||||||||||||||||||| ||||| Sbjct 136824 CA--TACATTTTCGGCGCAGGTTTACTCGATCAGTGAGCTATTACGCACTCTTTAAAGGA 136881 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 | |||||||| |||| ||||||||| |||| |||||| |||| |||||| ||||| || Sbjct 136882 TTGCTGCTTCTAAGCAAACCTCCTGATTGTTTACGCACTCCCACCTCCTTTACCACTTAG 136941 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | ||| |||||||| ||| || |||||||||||||||||| Sbjct 136942 CAATTATTTAAGGGCCTTAACTGGTGCTCTGGGCTGTTTCCCTCT 136986 >seq43102 Length=56976 Score = 192 bits (212), Expect = 1e-46 Identities = 290/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||| |||||||| || |||| |||| || ||| | | | | Sbjct 16213 CGACTACGCTTTTCAGCCTGGCCTTAGGTCCTGACTTACCCTCCGCGGACGAGCCTTCCG 16154 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 16153 GAGGAAACCTTGGGTTTTCGGGGTATAGGATTCTCACCTATATTTTCGTTACTCAAGCCG 16094 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTC-ACCACTGACA 176 |||||||||| || || |||| || | | || | |||| ||| ||| Sbjct 16093 ACATTCTCACTTCTGCTTCG--TCCAT-ACCCGCTTACGCTAATACTTCGACCTACAACA 16037 Query 177 CGACGCTCCCCTACCCAACCACACAGGT---TGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | | | | | | ||||| |||||| || ||||| || Sbjct 16036 GAACGCTCCCCTACCGATATATAAATATATATCGCACAGTTTCGGCAAATTACTTAGTCC 15977 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 | |||||| ||||||| | | ||| || ||||||||||||||||||||||| ||||| Sbjct 15976 CA--TACATTTTCGGCGCAGGTTTACTCGATCAGTGAGCTATTACGCACTCTTTAAAGGA 15919 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 | |||||||| |||| ||||||||| |||| |||||| |||| |||||| ||||| || Sbjct 15918 TTGCTGCTTCTAAGCAAACCTCCTGATTGTTTACGCACTCCCACCTCCTTTACCACTTAG 15859 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | ||| |||||||| ||| || |||||||||||||||||| Sbjct 15858 CAATTATTTAAGGGCCTTAACTGGTGCTCTGGGCTGTTTCCCTCT 15814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177000695808