Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq50892 105 6e-21 seq43102 105 6e-21 >seq50892 Length=141790 Score = 105 bits (116), Expect = 6e-21 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || | ||| | | ||||||| || |||| | Sbjct 73619 CGAGTTGCAGCCTACAATCCGAACTTAGAACGAGTTTATAG-ATTAGCTAGCCTTCGCAG 73561 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| || | | ||| | ||| |||| ||||||| ||||| |||||| ||| Sbjct 73560 GTTTGCATCTCATTGTCTCGCCCAATGTAGCACGTGTGTAGCCCAGGGTGTAAGGGGCAT 73501 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 | |||||||||||||||||||||||||||||||| Sbjct 73500 GCTGACTTGACGTCATCCCCACCTTCCTCCGGTTT 73466 Score = 105 bits (116), Expect = 6e-21 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || | ||| | | ||||||| || |||| | Sbjct 138470 CGAGTTGCAGCCTACAATCCGAACTTAGAACGAGTTTATAG-ATTAGCTAGCCTTCGCAG 138528 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| || | | ||| | ||| |||| ||||||| ||||| |||||| ||| Sbjct 138529 GTTTGCATCTCATTGTCTCGCCCAATGTAGCACGTGTGTAGCCCAGGGTGTAAGGGGCAT 138588 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 | |||||||||||||||||||||||||||||||| Sbjct 138589 GCTGACTTGACGTCATCCCCACCTTCCTCCGGTTT 138623 >seq43102 Length=56976 Score = 105 bits (116), Expect = 6e-21 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || | ||| | | ||||||| || |||| | Sbjct 14330 CGAGTTGCAGCCTACAATCCGAACTTAGAACGAGTTTATAG-ATTAGCTAGCCTTCGCAG 14272 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| || | | ||| | ||| |||| ||||||| ||||| |||||| ||| Sbjct 14271 GTTTGCATCTCATTGTCTCGCCCAATGTAGCACGTGTGTAGCCCAGGGTGTAAGGGGCAT 14212 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 | |||||||||||||||||||||||||||||||| Sbjct 14211 GCTGACTTGACGTCATCCCCACCTTCCTCCGGTTT 14177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415794905240