Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq50892 170 3e-40 seq43102 170 3e-40 >seq50892 Length=141790 Score = 170 bits (188), Expect = 3e-40 Identities = 211/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || || ||| | | |||| || || ||||||| ||||||| | Sbjct 73075 GCTTTCGTCTCTGAGTGTTAGTAATAGCCCAGTAAAGTGCTTTCGCCATCGGTGTTCTTT 73016 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| || ||||| | |||| || Sbjct 73015 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTTTACCTCTACTATACTCTAG 72956 Query 126 AAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 || |||||| | ||| | | || |||||||| || ||| ||| |||||| Sbjct 72955 TCTAATAGTTTCGACTGC-GATTTTGAAGTTGAGCCTCAAGATTTAACAGTTGACTTATT 72897 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||| | | |||||||||| ||||| ||| ||| || Sbjct 72896 AAACCACCTACAGACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCTCCGTCTT 72837 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 72836 ACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTA 72791 Score = 170 bits (188), Expect = 3e-40 Identities = 211/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || || ||| | | |||| || || ||||||| ||||||| | Sbjct 139014 GCTTTCGTCTCTGAGTGTTAGTAATAGCCCAGTAAAGTGCTTTCGCCATCGGTGTTCTTT 139073 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| || ||||| | |||| || Sbjct 139074 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTTTACCTCTACTATACTCTAG 139133 Query 126 AAAAACAGTTTCAAATGCAGGCTATG-GGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 || |||||| | ||| | | || |||||||| || ||| ||| |||||| Sbjct 139134 TCTAATAGTTTCGACTGC-GATTTTGAAGTTGAGCCTCAAGATTTAACAGTTGACTTATT 139192 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||| | | |||||||||| ||||| ||| ||| || Sbjct 139193 AAACCACCTACAGACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCTCCGTCTT 139252 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 139253 ACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTA 139298 >seq43102 Length=56976 Score = 170 bits (188), Expect = 3e-40 Identities = 211/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || || ||| | | |||| || || ||||||| ||||||| | Sbjct 13786 GCTTTCGTCTCTGAGTGTTAGTAATAGCCCAGTAAAGTGCTTTCGCCATCGGTGTTCTTT 13727 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||| ||| | |||||| || ||||| | |||| || Sbjct 13726 CCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTTTACCTCTACTATACTCTAG 13667 Query 126 AAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 || |||||| | ||| | | || |||||||| || ||| ||| |||||| Sbjct 13666 TCTAATAGTTTCGACTGC-GATTTTGAAGTTGAGCCTCAAGATTTAACAGTTGACTTATT 13608 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||| | | |||||||||| ||||| ||| ||| || Sbjct 13607 AAACCACCTACAGACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCTCCGTCTT 13548 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 13547 ACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTA 13502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828391388132