Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq50892 93.3 3e-17 seq43102 93.3 3e-17 >seq50892 Length=141790 Score = 93.3 bits (102), Expect = 3e-17 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||| || |||| ||||| ||| || | |||||||| |||| Sbjct 76532 TAACTTTTATCCGTTGAGTGACGGCCTTTCCACTCAGTACCGTCAGATCACTAAGACCGA 76473 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | |||| || |||||| ||| |||| || |||| | Sbjct 76472 CTTTCGTCCCTGCTCGACTTGTAGGTCTCACAGTCAAGCTTCCTTATGCCTTTACACTCT 76413 Query 121 CACTACGATTTCCGACCGT 139 ||||||||| ||||| Sbjct 76412 AGATACGATTTCTAACCGT 76394 Score = 93.3 bits (102), Expect = 3e-17 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||| || |||| ||||| ||| || | |||||||| |||| Sbjct 135557 TAACTTTTATCCGTTGAGTGACGGCCTTTCCACTCAGTACCGTCAGATCACTAAGACCGA 135616 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | |||| || |||||| ||| |||| || |||| | Sbjct 135617 CTTTCGTCCCTGCTCGACTTGTAGGTCTCACAGTCAAGCTTCCTTATGCCTTTACACTCT 135676 Query 121 CACTACGATTTCCGACCGT 139 ||||||||| ||||| Sbjct 135677 AGATACGATTTCTAACCGT 135695 >seq43102 Length=56976 Score = 93.3 bits (102), Expect = 3e-17 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||| || |||| ||||| ||| || | |||||||| |||| Sbjct 17243 TAACTTTTATCCGTTGAGTGACGGCCTTTCCACTCAGTACCGTCAGATCACTAAGACCGA 17184 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | |||| || |||||| ||| |||| || |||| | Sbjct 17183 CTTTCGTCCCTGCTCGACTTGTAGGTCTCACAGTCAAGCTTCCTTATGCCTTTACACTCT 17124 Query 121 CACTACGATTTCCGACCGT 139 ||||||||| ||||| Sbjct 17123 AGATACGATTTCTAACCGT 17105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351832056400