Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq50892 295 1e-77 seq43102 295 1e-77 seq38168 84.2 3e-14 >seq50892 Length=141790 Score = 295 bits (326), Expect = 1e-77 Identities = 231/275 (84%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| |||| || ||||| ||||| Sbjct 76868 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCACTCCATACATAGCTACCCAG 76809 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| |||||||||| ||||| || ||||||||||||| Sbjct 76808 CGTTTACCGTTGGCACGATAACTGGTACACCAGAGGTATGTCCTTCTCGGTCCTCTCGTA 76749 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 |||| || ||||||||||| ||| ||||| || |||||| ||||||||||||||| Sbjct 76748 CTAAAGAAGGCTCCTCTCAATATTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 76689 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 76688 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 76629 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 76628 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 76594 Score = 295 bits (326), Expect = 1e-77 Identities = 231/275 (84%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| |||| || ||||| ||||| Sbjct 135221 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCACTCCATACATAGCTACCCAG 135280 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| |||||||||| ||||| || ||||||||||||| Sbjct 135281 CGTTTACCGTTGGCACGATAACTGGTACACCAGAGGTATGTCCTTCTCGGTCCTCTCGTA 135340 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 |||| || ||||||||||| ||| ||||| || |||||| ||||||||||||||| Sbjct 135341 CTAAAGAAGGCTCCTCTCAATATTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 135400 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 135401 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 135460 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 135461 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 135495 >seq43102 Length=56976 Score = 295 bits (326), Expect = 1e-77 Identities = 231/275 (84%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| |||| || ||||| ||||| Sbjct 17579 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCACTCCATACATAGCTACCCAG 17520 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| |||||||||| ||||| || ||||||||||||| Sbjct 17519 CGTTTACCGTTGGCACGATAACTGGTACACCAGAGGTATGTCCTTCTCGGTCCTCTCGTA 17460 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 |||| || ||||||||||| ||| ||||| || |||||| ||||||||||||||| Sbjct 17459 CTAAAGAAGGCTCCTCTCAATATTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 17400 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 17399 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 17340 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 17339 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 17305 >seq38168 Length=32109 Score = 84.2 bits (92), Expect = 3e-14 Identities = 180/264 (68%), Gaps = 10/264 (4%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| ||||| || ||| ||||| | | || |||| || | Sbjct 4099 CTTAAATGCATTCAGTAATTATCTTTTATAAATGTAGCTACTCGGCGATGCTATTTT-AT 4041 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | ||||| || ||| | ||||||||||||||||||| || ||| | Sbjct 4040 AACAACCGATTCACCATAGATTTATTTTTCCCGGTCCTCTCGTACTAGGGTTTACTCTTT 3981 Query 137 TCAAATTTCCT-ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 | || ||| | || | | |||||||||| ||||| || | |||||| ||| | Sbjct 3980 TAAATTTTTATAACACTTGTGGTAGATAGGGACCAAACTGATTCACATCGTTCTAAACTC 3921 Query 196 AGCTCGCGT---GCCTCT-TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 || || || |||| | ||||| ||||| ||||||||| |||| |||||| Sbjct 3920 AGATCATGTACCGCCTTTCTTAAT----GAACAATTAAACCCTTGGAACCTTTTTCAGCT 3865 Query 252 CCAGGATGAGACGAGCCGACATCG 275 |||||||| || | || |||||| Sbjct 3864 CCAGGATGCGATAATCCAACATCG 3841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780415052912