Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq50892 226 7e-57 seq43102 226 7e-57 seq38168 95.1 3e-17 >seq50892 Length=141790 Score = 226 bits (250), Expect = 7e-57 Identities = 297/410 (72%), Gaps = 26/410 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||| ||||| ||||||| || ||| | |||||||| |||||||| Sbjct 72759 TTTACAACCCATAGGCAGTCTTCCCTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATT 72700 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72699 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 72640 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| || |||||||| ||||| || ||||||||||| ||| || ||||| ||| Sbjct 72639 GTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGCCTTGGTAAGCTCTTACCTTACCA 72580 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 || ||||||| || | | | | || | | | | || ||| ||| Sbjct 72579 ACAAGCTAAT--CAGCCGCGAGCTTC---TCTTCTGGCGGATAAAAATCC----ATTTCA 72529 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | | |||| ||||||||| |||||||| | |||||||||||||| ||||| Sbjct 72528 CTAAGTAAGCATATGGGGTATTAGCATTCGTTTCCAATTGTTATCCCCCTCCAAAAGGCA 72469 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 ||| || |||||||||||||||||||| ||| || || || Sbjct 72468 AATTCTCACGTGTTACTCACCCGTCCGCCACT-------AAAGTTAAAAACT--TT---- 72422 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||||| | ||||||||||||| ||||| Sbjct 72421 ----CGTACGACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 72376 Score = 226 bits (250), Expect = 7e-57 Identities = 297/410 (72%), Gaps = 26/410 (6%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||| ||||| ||||||| || ||| | |||||||| |||||||| Sbjct 139330 TTTACAACCCATAGGCAGTCTTCCCTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATT 139389 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139390 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 139449 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| || |||||||| ||||| || ||||||||||| ||| || ||||| ||| Sbjct 139450 GTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGCCTTGGTAAGCTCTTACCTTACCA 139509 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 || ||||||| || | | | | || | | | | || ||| ||| Sbjct 139510 ACAAGCTAAT--CAGCCGCGAGCTTC---TCTTCTGGCGGATAAAAATCC----ATTTCA 139560 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | | |||| ||||||||| |||||||| | |||||||||||||| ||||| Sbjct 139561 CTAAGTAAGCATATGGGGTATTAGCATTCGTTTCCAATTGTTATCCCCCTCCAAAAGGCA 139620 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 ||| || |||||||||||||||||||| ||| || || || Sbjct 139621 AATTCTCACGTGTTACTCACCCGTCCGCCACT-------AAAGTTAAAAACT--TT---- 139667 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||||| | ||||||||||||| ||||| Sbjct 139668 ----CGTACGACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 139713 >seq43102 Length=56976 Score = 226 bits (250), Expect = 7e-57 Identities = 297/410 (72%), Gaps = 26/410 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||| ||||| ||||||| || ||| | |||||||| |||||||| Sbjct 13470 TTTACAACCCATAGGCAGTCTTCCCTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATT 13411 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13410 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 13351 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 | ||| || |||||||| ||||| || ||||||||||| ||| || ||||| ||| Sbjct 13350 GTCTGATCGTCCTCTCAAACCAGATACTGATCGTCGCCTTGGTAAGCTCTTACCTTACCA 13291 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 || ||||||| || | | | | || | | | | || ||| ||| Sbjct 13290 ACAAGCTAAT--CAGCCGCGAGCTTC---TCTTCTGGCGGATAAAAATCC----ATTTCA 13240 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | | |||| ||||||||| |||||||| | |||||||||||||| ||||| Sbjct 13239 CTAAGTAAGCATATGGGGTATTAGCATTCGTTTCCAATTGTTATCCCCCTCCAAAAGGCA 13180 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 ||| || |||||||||||||||||||| ||| || || || Sbjct 13179 AATTCTCACGTGTTACTCACCCGTCCGCCACT-------AAAGTTAAAAACT--TT---- 13133 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||||| | ||||||||||||| ||||| Sbjct 13132 ----CGTACGACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 13087 >seq38168 Length=32109 Score = 95.1 bits (104), Expect = 3e-17 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 3 ACTTTACAACCCGAAG---GCCTTC-TTCATACACGCGGCATGGCTGCATCAGGCTTGCG 58 ||||||||||| || ||| || ||||| ||| | || |||| |||| ||| || Sbjct 4750 ACTTTACAACCAAAAATTAGCCGTCATTCATTCACATAGTATTGCTGGATCAAACTTTCG 4691 Query 59 CCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTC 118 ||||| ||||||||| |||||||| || ||| ||||||| ||||||||||| Sbjct 4690 TTAATTGTCCAATATTCCTCACTGCTGGCTAAAATAGC---CTGGACCTTGTCTCAGTTC 4634 Query 119 CAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-C 177 |||||||| || || ||||| || ||| ||| |||| | | || |||| | ||| Sbjct 4633 CAGTGTGGTTGCACACCCTCTTAGGCCAACTAAAGATCATAGGCTTGGTGCACTTTTATT 4574 Query 178 CCCGCCAACTAGCTAATC 195 | ||||||| |||||| Sbjct 4573 TACACCAACTACCTAATC 4556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221777896192