Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq50892 345 1e-92 seq43102 345 1e-92 seq38168 158 4e-36 >seq50892 Length=141790 Score = 345 bits (382), Expect = 1e-92 Identities = 285/344 (83%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| | | Sbjct 72562 CGCGGCTGATTAGCTTGTTGGTAAGGTAAGAGCTTACCAAGGCGACGATCAGTATCTGGT 72621 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||| |||| | |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 72622 TTGAGAGGACGATCAGACACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 72681 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| ||||||||| || || Sbjct 72682 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGAAGA 72741 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG-GTACTTGAGGAG 396 |||| |||| ||||| |||| | ||| ||| || |||||||| |||| ||| || Sbjct 72742 CTGCCTATGGGTTGTAAACCTCTTTTTTCAGGGAGGAATTAATGACGTGTACCTGAAGAA 72801 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| |||||||||||||||||||| ||| ||| || || ||||||| Sbjct 72802 TAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGTGTTATCC 72861 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||| |||||||||| || ||||||||||| |||||| Sbjct 72862 GGAATCACT-GGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTC 72904 Score = 345 bits (382), Expect = 1e-92 Identities = 285/344 (83%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| | | Sbjct 139527 CGCGGCTGATTAGCTTGTTGGTAAGGTAAGAGCTTACCAAGGCGACGATCAGTATCTGGT 139468 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||| |||| | |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 139467 TTGAGAGGACGATCAGACACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 139408 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| ||||||||| || || Sbjct 139407 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGAAGA 139348 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG-GTACTTGAGGAG 396 |||| |||| ||||| |||| | ||| ||| || |||||||| |||| ||| || Sbjct 139347 CTGCCTATGGGTTGTAAACCTCTTTTTTCAGGGAGGAATTAATGACGTGTACCTGAAGAA 139288 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| |||||||||||||||||||| ||| ||| || || ||||||| Sbjct 139287 TAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGTGTTATCC 139228 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||| |||||||||| || ||||||||||| |||||| Sbjct 139227 GGAATCACT-GGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTC 139185 >seq43102 Length=56976 Score = 345 bits (382), Expect = 1e-92 Identities = 285/344 (83%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| | | Sbjct 13273 CGCGGCTGATTAGCTTGTTGGTAAGGTAAGAGCTTACCAAGGCGACGATCAGTATCTGGT 13332 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||| |||| | |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 13333 TTGAGAGGACGATCAGACACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 13392 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| ||||||||| || || Sbjct 13393 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGAAGA 13452 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG-GTACTTGAGGAG 396 |||| |||| ||||| |||| | ||| ||| || |||||||| |||| ||| || Sbjct 13453 CTGCCTATGGGTTGTAAACCTCTTTTTTCAGGGAGGAATTAATGACGTGTACCTGAAGAA 13512 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| |||||||||||||||||||| ||| ||| || || ||||||| Sbjct 13513 TAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGCAAGTGTTATCC 13572 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| ||| |||||||||| || ||||||||||| |||||| Sbjct 13573 GGAATCACT-GGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTC 13615 >seq38168 Length=32109 Score = 158 bits (174), Expect = 4e-36 Identities = 243/341 (71%), Gaps = 12/341 (4%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTA-AGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| |||||||| | ||| | |||||| | | |||| ||| | ||| ||| Sbjct 4556 GATTAGGTAGTTGGTGTAAATAAAAGTGCACCAAGCCTATGATCTTTAGTTGGCCTAAGA 4615 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 ||||| | ||||| ||||||||||||| |||||| || | || |||||||| Sbjct 4616 GGGTGTGCAACCACACTGGAACTGAGACAAGGTCCAGGCTATTTT---AGCCAGCAGTGA 4672 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGA-TGAAGGCC 344 ||||||||| ||||| | |||| |||| |||||| | |||| || ||| ||| Sbjct 4673 GGAATATTGGACAATTAACGAAAGTTTGATCCAGCAATACTATGTGAATGAATGACGGCT 4732 Query 345 ---TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA--- 398 || ||| |||||| ||| || | || | ||||||||| || || | | | Sbjct 4733 AATTTTTGGTTGTAAAGTTCTTTCGTTAAAAATGATAATGACATTATTTAAAAAAGTTTT 4792 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 || ||||||||| |||||||||||||||||||||||| ||||| |||||||| || Sbjct 4793 AGTCCCGGCTAATCTCGTGCCAGCAGCCGCGGTAATACGGGAGGGGCAAGCGTTATTCGA 4852 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||||| ||||||| | | ||||||| || |||||| Sbjct 4853 AATTACT-GGGCGTACAAAATTCGTAGGTTGTAATTTAAGT 4892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496837841408