Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq50892 253 5e-65 seq43102 253 5e-65 seq38168 102 2e-19 >seq50892 Length=141790 Score = 253 bits (280), Expect = 5e-65 Identities = 265/348 (76%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| ||||||||| |||||||||||||||||||| ||| ||| || Sbjct 72791 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 72850 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || |||||||||||| ||||||||||||| || ||||||||||| ||||||| || Sbjct 72851 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTCAACTGT 72910 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | |||||||| | | || | |||||| | ||||||| || || Sbjct 72911 TAAATCTTGAGGCTCAACTTCAAAATCGCAGTCGAAACTATTAGACTAGAGTATAGTAGA 72970 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || || |||||| | |||| |||||||||||||||||||||| | | ||||||| ||| Sbjct 72971 GGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGG 73030 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || || |||| || | ||| ||||| || ||||||| ||| |||||| | Sbjct 73031 CGAAAGCACTTTACTGGGCTATTACTAACACTCAGAGACGAAAGCTAGGGTAGCAAATGG 73090 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 |||||||||||| ||||||| ||||||||| ||| ||||||| ||| Sbjct 73091 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGATGT 73138 Score = 253 bits (280), Expect = 5e-65 Identities = 265/348 (76%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| ||||||||| |||||||||||||||||||| ||| ||| || Sbjct 139298 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 139239 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || |||||||||||| ||||||||||||| || ||||||||||| ||||||| || Sbjct 139238 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTCAACTGT 139179 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | |||||||| | | || | |||||| | ||||||| || || Sbjct 139178 TAAATCTTGAGGCTCAACTTCAAAATCGCAGTCGAAACTATTAGACTAGAGTATAGTAGA 139119 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || || |||||| | |||| |||||||||||||||||||||| | | ||||||| ||| Sbjct 139118 GGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGG 139059 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || || |||| || | ||| ||||| || ||||||| ||| |||||| | Sbjct 139058 CGAAAGCACTTTACTGGGCTATTACTAACACTCAGAGACGAAAGCTAGGGTAGCAAATGG 138999 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 |||||||||||| ||||||| ||||||||| ||| ||||||| ||| Sbjct 138998 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGATGT 138951 >seq43102 Length=56976 Score = 253 bits (280), Expect = 5e-65 Identities = 265/348 (76%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| ||||||||| |||||||||||||||||||| ||| ||| || Sbjct 13502 TACCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGATGC 13561 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || |||||||||||| ||||||||||||| || ||||||||||| ||||||| || Sbjct 13562 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAATAAGTCAACTGT 13621 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | |||||||| | | || | |||||| | ||||||| || || Sbjct 13622 TAAATCTTGAGGCTCAACTTCAAAATCGCAGTCGAAACTATTAGACTAGAGTATAGTAGA 13681 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || || |||||| | |||| |||||||||||||||||||||| | | ||||||| ||| Sbjct 13682 GGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCGATGG 13741 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || || |||| || | ||| ||||| || ||||||| ||| |||||| | Sbjct 13742 CGAAAGCACTTTACTGGGCTATTACTAACACTCAGAGACGAAAGCTAGGGTAGCAAATGG 13801 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 |||||||||||| ||||||| ||||||||| ||| ||||||| ||| Sbjct 13802 GATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGATGT 13849 >seq38168 Length=32109 Score = 102 bits (112), Expect = 2e-19 Identities = 223/330 (68%), Gaps = 3/330 (1%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 || ||||||||| |||||||||||||||||||||||| ||||| |||||||| || Sbjct 4793 AGTCCCGGCTAATCTCGTGCCAGCAGCCGCGGTAATACGGGAGGGGCAAGCGTTATTCGA 4852 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 |||||||||||||| | | ||||||| || |||||| || ||| || || Sbjct 4853 AATTACTGGGCGTACAAAATTCGTAGGTTGTAATTTAAGTTGTGTGTTAAAATTTAAAGC 4912 Query 134 TCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATT 193 ||| | | | | ||| ||||||| | | | |||| ||||| Sbjct 4913 CTAACTTTAAAAGAACATACAATACTTTTTTACTAGAGTTGAATACAGAAAAGTAGAATT 4972 Query 194 CCTAGTGTAGCGGTGAAATGCGT-AGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 || || || || | | | | ||| | ||||| | || | |||||||| ||| Sbjct 4973 TTATGTTAAGGAGT-AATTACCTGAAATACATGAAGGAATATCAATAGCGAAGGCAACTT 5031 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 | | | |||||||||||||| ||||| || ||||||||| |||||||||||||| Sbjct 5032 TTTAGTAT-AAACTGACACTGAGGGATGAAAGTGTAGGGAGCAAATAGGATTAGATACCC 5090 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACT 342 | |||||| | | ||||| ||||| || Sbjct 5091 TAGTAGTCTATACTGTAAATTCTGAATGCT 5120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202587667456