Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq25219 232 1e-58 seq24965 210 4e-52 >seq25219 Length=11430 Score = 232 bits (256), Expect = 1e-58 Identities = 209/260 (80%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGG-CT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| ||| || |||| ||| ||||| | | |||||||||||||||| Sbjct 6122 GCTTCTTAGAGGGACGTTCGTTCTACAAGACGAAGGAAGATGGCGGCAATAACAGGTCTG 6181 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||||||||||||||| |||| ||| | |||| | || Sbjct 6182 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGTTACAATGATGCACTCAACAGGCATAT 6241 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||||||| ||| |||||||||| ||||| | ||||| | |||||||| || Sbjct 6242 AACCTTGGCCGAGAGGCCTGGGTAATCCCGTTAACTTGCATCGTGTTAGGGATAGATTAT 6301 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| |||| |||||||||| |||||||| ||| |||||| || ||| Sbjct 6302 TGCAATTATTAATCTTGAACGAGGAATTCCTAGTAATCGCAGATCATCAATCTGCAATGA 6361 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 6362 TTACGTCCCTGCCCTTTGTA 6381 >seq24965 Length=558 Score = 210 bits (232), Expect = 4e-52 Identities = 182/226 (81%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 GGAAGATGGCGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGT 497 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||| ||| | |||| | || |||||||||| ||| |||||||||| ||||| Sbjct 496 TACAATGATGCACTCAACAGGCATATAACCTTGGCCGAGAGGCCTGGGTAATCCCGTTAA 437 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | ||||| | |||||||| |||||||||||| |||| |||||||||| |||||| Sbjct 436 CTTGCATCGTGTTAGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAATTCCTAGT 377 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| |||||| || ||||||||||||||||||||||| Sbjct 376 AATCGCAGATCATCAATCTGCAATGATTACGTCCCTGCCCTTTGTA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946717950976