Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq50892 181 4e-43 seq43102 181 4e-43 seq38168 122 3e-25 >seq50892 Length=141790 Score = 181 bits (200), Expect = 4e-43 Identities = 388/568 (68%), Gaps = 25/568 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||| | ||| |||||| ||| || | |||||||||| || ||||||| ||||| Sbjct 74768 CGAGCCTGAATAGGGCGTTTGTCACTATTTATAGACCCGAACCCGGATGATCTAACCATG 74827 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||| ||||| | ||||| || |||||| || |||| ||| |||||||||||| Sbjct 74828 ATCAGGTTGAAGCTTAGGTAATACTAAGTGGAGGACCCAACCGACTGATGTTGAAAAATC 74887 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | |||||| ||||| ||||||||||| || || | || | ||| |||||||||||| Sbjct 74888 ACCGGATGAATTGTGGTTAGGGGTGAAATGCCAATCGAATTCGGAGCTAGCTGGTTCTCC 74947 Query 182 CCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG- 239 |||||| ||| || || | || | | |||||| |||||||||| | Sbjct 74948 CCGAAATGCGTTTTGGCGCAGCGGTGAATGTTATAGTTTAGGGGTAAAGCACTGTTACGT 75007 Query 240 --GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCA----TCAG 293 || | ||| ||| || ||||||| | ||||||||| |||| | | ||| Sbjct 75008 ATGCGGGCTGGTAATT-CG--GTACCAAATCGTTGCAAACTAAGAATACTAAATGTACAG 75064 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 || ||| ||| || |||| | |||| ||| | | ||||| || | || Sbjct 75065 -TTCACC-----AGTAAGACTGTGGGGGATAAGCTCCATTGTCAAGAGGGAAACAGCCCA 75118 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 || | ||| |||||||| |||| | ||||||| | || || || || ||| | Sbjct 75119 GAGCACCAGTTAAGGCCCTTAAATAATTGCTAAGTGGTA--AAGGAGGTGGGAGTGCGTA 75176 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| |||| ||| |||| ||||||| || || |||||||||||||||| |||||||| Sbjct 75177 AACAATCAGGAGGTTTGCTTAGAAGCAG-CAATCCTTTAAAGAGTGCGTAATAGCTCACT 75235 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 ||||| | | ||| || ||| | || | ||||| | | ||||| | ||| || Sbjct 75236 GATCGAGTAAACCTGCGCCGAAAAT-GTATGGGACTAAGTAATTTGCCGAAACTGTGCGA 75294 Query 534 T---CATTTATATGATCGGTAGGGGAGC 558 | |||||||| |||||||||||||| Sbjct 75295 TATATATTTATAT-ATCGGTAGGGGAGC 75321 Score = 181 bits (200), Expect = 4e-43 Identities = 388/568 (68%), Gaps = 25/568 (4%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||| | ||| |||||| ||| || | |||||||||| || ||||||| ||||| Sbjct 137321 CGAGCCTGAATAGGGCGTTTGTCACTATTTATAGACCCGAACCCGGATGATCTAACCATG 137262 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||| ||||| | ||||| || |||||| || |||| ||| |||||||||||| Sbjct 137261 ATCAGGTTGAAGCTTAGGTAATACTAAGTGGAGGACCCAACCGACTGATGTTGAAAAATC 137202 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | |||||| ||||| ||||||||||| || || | || | ||| |||||||||||| Sbjct 137201 ACCGGATGAATTGTGGTTAGGGGTGAAATGCCAATCGAATTCGGAGCTAGCTGGTTCTCC 137142 Query 182 CCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG- 239 |||||| ||| || || | || | | |||||| |||||||||| | Sbjct 137141 CCGAAATGCGTTTTGGCGCAGCGGTGAATGTTATAGTTTAGGGGTAAAGCACTGTTACGT 137082 Query 240 --GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCA----TCAG 293 || | ||| ||| || ||||||| | ||||||||| |||| | | ||| Sbjct 137081 ATGCGGGCTGGTAATT-CG--GTACCAAATCGTTGCAAACTAAGAATACTAAATGTACAG 137025 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 || ||| ||| || |||| | |||| ||| | | ||||| || | || Sbjct 137024 -TTCACC-----AGTAAGACTGTGGGGGATAAGCTCCATTGTCAAGAGGGAAACAGCCCA 136971 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 || | ||| |||||||| |||| | ||||||| | || || || || ||| | Sbjct 136970 GAGCACCAGTTAAGGCCCTTAAATAATTGCTAAGTGGTA--AAGGAGGTGGGAGTGCGTA 136913 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| |||| ||| |||| ||||||| || || |||||||||||||||| |||||||| Sbjct 136912 AACAATCAGGAGGTTTGCTTAGAAGCAG-CAATCCTTTAAAGAGTGCGTAATAGCTCACT 136854 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 ||||| | | ||| || ||| | || | ||||| | | ||||| | ||| || Sbjct 136853 GATCGAGTAAACCTGCGCCGAAAAT-GTATGGGACTAAGTAATTTGCCGAAACTGTGCGA 136795 Query 534 T---CATTTATATGATCGGTAGGGGAGC 558 | |||||||| |||||||||||||| Sbjct 136794 TATATATTTATAT-ATCGGTAGGGGAGC 136768 >seq43102 Length=56976 Score = 181 bits (200), Expect = 4e-43 Identities = 388/568 (68%), Gaps = 25/568 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||| | ||| |||||| ||| || | |||||||||| || ||||||| ||||| Sbjct 15479 CGAGCCTGAATAGGGCGTTTGTCACTATTTATAGACCCGAACCCGGATGATCTAACCATG 15538 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||| ||||| | ||||| || |||||| || |||| ||| |||||||||||| Sbjct 15539 ATCAGGTTGAAGCTTAGGTAATACTAAGTGGAGGACCCAACCGACTGATGTTGAAAAATC 15598 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 | |||||| ||||| ||||||||||| || || | || | ||| |||||||||||| Sbjct 15599 ACCGGATGAATTGTGGTTAGGGGTGAAATGCCAATCGAATTCGGAGCTAGCTGGTTCTCC 15658 Query 182 CCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG- 239 |||||| ||| || || | || | | |||||| |||||||||| | Sbjct 15659 CCGAAATGCGTTTTGGCGCAGCGGTGAATGTTATAGTTTAGGGGTAAAGCACTGTTACGT 15718 Query 240 --GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCA----TCAG 293 || | ||| ||| || ||||||| | ||||||||| |||| | | ||| Sbjct 15719 ATGCGGGCTGGTAATT-CG--GTACCAAATCGTTGCAAACTAAGAATACTAAATGTACAG 15775 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 || ||| ||| || |||| | |||| ||| | | ||||| || | || Sbjct 15776 -TTCACC-----AGTAAGACTGTGGGGGATAAGCTCCATTGTCAAGAGGGAAACAGCCCA 15829 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 || | ||| |||||||| |||| | ||||||| | || || || || ||| | Sbjct 15830 GAGCACCAGTTAAGGCCCTTAAATAATTGCTAAGTGGTA--AAGGAGGTGGGAGTGCGTA 15887 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| |||| ||| |||| ||||||| || || |||||||||||||||| |||||||| Sbjct 15888 AACAATCAGGAGGTTTGCTTAGAAGCAG-CAATCCTTTAAAGAGTGCGTAATAGCTCACT 15946 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 ||||| | | ||| || ||| | || | ||||| | | ||||| | ||| || Sbjct 15947 GATCGAGTAAACCTGCGCCGAAAAT-GTATGGGACTAAGTAATTTGCCGAAACTGTGCGA 16005 Query 534 T---CATTTATATGATCGGTAGGGGAGC 558 | |||||||| |||||||||||||| Sbjct 16006 TATATATTTATAT-ATCGGTAGGGGAGC 16032 >seq38168 Length=32109 Score = 122 bits (134), Expect = 3e-25 Identities = 130/171 (76%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGT---GCGGTAACACGCCCTGG 92 ||||||||| |||||||||| ||||| ||| |||| | |||||||| | || Sbjct 2159 ACCCGAAACTAAGTGATCTAACCATGAACAGATTGAATTTAAAGCGGTAACGCTTATTGA 2218 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| ||||| | |||| | ||||| | ||||| ||||| |||| ||||||||| Sbjct 2219 AGGATCGAACTCGTGTATGTGGCAAAATACTGAGATGATTTGTGGTTAGGAGTGAAAGGC 2278 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||||||| || |||||||||| ||| ||||| ||||||| |||| || Sbjct 2279 TAAACAAACTTAGAGATAGCTGGTTTTCTGCGAAATCTATTTAAGTAGAGC 2329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688740128768