Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq50892 132 9e-29 seq43102 132 9e-29 >seq50892 Length=141790 Score = 132 bits (146), Expect = 9e-29 Identities = 178/245 (73%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||| ||||||| | | | |||||||||||||| || | ||||| ||| || Sbjct 74129 ATGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGTGGTTACCAACGATATGCTTCG 74188 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 ||||| | ||||| || ||||||| || |||||||||| || ||| ||| Sbjct 74189 GGGAGCTGG-AAACAAGCTATGATCCGGAGGTTTCCGAATGAGGCAACT------TTT-- 74239 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | | | | | ||||||||||| || | || ||| ||| | ||| |||||||||| | Sbjct 74240 -TAACTACTTATTGAATACATAGATAAGAAAGAGCAAACCTAGAGAATTGAAACATCTTA 74298 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||| || ||||||||||| || ||||||| ||||| ||||||||||| ||||| Sbjct 74299 GTACCTAGAGGAAAAGAAAGTAAAAACGATTCCCTGAGTAGCGGCGAGCGAAACGGGATT 74358 Query 247 AGCCT 251 ||||| Sbjct 74359 AGCCT 74363 Score = 132 bits (146), Expect = 9e-29 Identities = 178/245 (73%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||| ||||||| | | | |||||||||||||| || | ||||| ||| || Sbjct 137960 ATGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGTGGTTACCAACGATATGCTTCG 137901 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 ||||| | ||||| || ||||||| || |||||||||| || ||| ||| Sbjct 137900 GGGAGCTGG-AAACAAGCTATGATCCGGAGGTTTCCGAATGAGGCAACT------TTT-- 137850 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | | | | | ||||||||||| || | || ||| ||| | ||| |||||||||| | Sbjct 137849 -TAACTACTTATTGAATACATAGATAAGAAAGAGCAAACCTAGAGAATTGAAACATCTTA 137791 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||| || ||||||||||| || ||||||| ||||| ||||||||||| ||||| Sbjct 137790 GTACCTAGAGGAAAAGAAAGTAAAAACGATTCCCTGAGTAGCGGCGAGCGAAACGGGATT 137731 Query 247 AGCCT 251 ||||| Sbjct 137730 AGCCT 137726 >seq43102 Length=56976 Score = 132 bits (146), Expect = 9e-29 Identities = 178/245 (73%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||| |||| ||||||| | | | |||||||||||||| || | ||||| ||| || Sbjct 14840 ATGGGGGATACCTTGGCATTCAGAAGCGATGAAGGACGTGGTTACCAACGATATGCTTCG 14899 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 ||||| | ||||| || ||||||| || |||||||||| || ||| ||| Sbjct 14900 GGGAGCTGG-AAACAAGCTATGATCCGGAGGTTTCCGAATGAGGCAACT------TTT-- 14950 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | | | | | ||||||||||| || | || ||| ||| | ||| |||||||||| | Sbjct 14951 -TAACTACTTATTGAATACATAGATAAGAAAGAGCAAACCTAGAGAATTGAAACATCTTA 15009 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||| || ||||||||||| || ||||||| ||||| ||||||||||| ||||| Sbjct 15010 GTACCTAGAGGAAAAGAAAGTAAAAACGATTCCCTGAGTAGCGGCGAGCGAAACGGGATT 15069 Query 247 AGCCT 251 ||||| Sbjct 15070 AGCCT 15074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917932607872