Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq25219 616 5e-174 seq17554 140 1e-30 seq1950 80.6 9e-13 >seq25219 Length=11430 Score = 616 bits (682), Expect = 5e-174 Identities = 460/535 (86%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 10263 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTGACCTTAGGACACCTGTGTTATT 10204 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||| |||| | | || | | Sbjct 10203 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGTTGTCTCC--CGCGTAGC 10146 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGG-----TCGGTGAAGACCAGTTCCG-C 178 ||| | | | ||||| |||||| || | | ||| | | | | | | Sbjct 10145 TCACCGAACAAGCCGGCTTAAATCCAGAACCAGGCGCCATTGCTGACGGCTGGGTGCTAC 10086 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCT 238 ||| ||||||||| ||| || | |||||||||||||| ||||||||| ||| Sbjct 10085 GTCACGAGATAAGTAAAACAACATTACGAGTAGTGGTATTTCAGGTGCGCCGAA---GCT 10029 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 10028 CCCACTTATTCTACACCTCATAAGTCATTTCACAACGTCGGACTAGAGTCAAGCTCAACA 9969 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 9968 GGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGAT 9909 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 9908 AGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGAC 9849 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9848 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 9789 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 9788 GAATTCCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTACGTCAACA 9734 >seq17554 Length=762 Score = 140 bits (154), Expect = 1e-30 Identities = 95/107 (89%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 279 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTGACCTTAGGACACCTGTGTTATT 338 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 339 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGTTGTC 385 >seq1950 Length=14887 Score = 80.6 bits (88), Expect = 9e-13 Identities = 71/88 (81%), Gaps = 13/88 (15%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATA-----GTTACTCCCGCCGTTTACC--CGCGCTTGGTTGAATTTC-- 485 |||||||||||||| ||||||| ||||||||||| |||||||||||||||| | Sbjct 691 TTAAGAGAGTCATATAGTAGTTACTCTCGCCGTTTACCTGCGCGCTTGGTTGAATTCCTT 750 Query 486 ----TTCACTTTGACATTCAGAGCACTG 509 ||||||||| ||| |||||||||| Sbjct 751 CACTTTCACTTTGGCATCCAGAGCACTG 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634367814016