Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq50892 248 3e-63 seq43102 248 3e-63 seq38168 111 5e-22 >seq50892 Length=141790 Score = 248 bits (274), Expect = 3e-63 Identities = 402/572 (70%), Gaps = 26/572 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||| |||||||||| |||| ||| |||||||| | |||| | Sbjct 76459 TCGACTTGTAGGTCTCACAGTCAAGCTTCCTTATGCCTTTACACTCTAGATACGATTTCT 76400 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| | |||| |||||||| |||||||||||| ||||||||| | |||||||||| Sbjct 76399 AACCGTTCAGAGGAAACCTTTGTACGCCTCCGTTACCGTTTGGGAGG-CGACCGCCCCAG 76341 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATC--- 177 | ||||| ||| || | ||||||| |||||| ||| ||| |||||| ||| Sbjct 76340 TCAAACTGCCCGCCTGAAACTGTCCTTTGACCAGATAATGATTCAAAGTTAGAAATCTAA 76281 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCAT 234 || ||| |||||||||| ||| | | ||||| | |||| || | || Sbjct 76280 CATTACA---AGAGTGGTATCTCACTGATGGCTCCAATAATCCCACAAGATTATAATCAA 76224 Query 235 CATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 || ||||||||||| || | | || | ||| |||| |||| || ||| || Sbjct 76223 CAC---CTCCCACCTATACTGCGCGAATAAAGTCCAATTTCAATTTCAAGTTACAGTAAA 76167 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||||| || | | ||||||| || | | ||| Sbjct 76166 GCTTCATAGGGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTATT 76107 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||| ||| | ||||||| | | || ||||||| ||||||| ||||||||| Sbjct 76106 TCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATTACGCCTTTCGTGCGGGTCGGAAC 76047 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 76046 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCAG 75987 Query 474 GGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCA-CGAGTCCTCTTAACCTTCC 532 ||||||| ||| | || || | | |||| | | | | || ||||||||| Sbjct 75986 GGCTTCAGTTATCAGCTTCGC----------GAATGCTAACCAACTTCT-TTAACCTTCT 75938 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||| ||||||||||||| || |||| ||| Sbjct 75937 GGCACTGGGCAGGCGTCAGCCCCCATACATCG 75906 Score = 248 bits (274), Expect = 3e-63 Identities = 402/572 (70%), Gaps = 26/572 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||| |||||||||| |||| ||| |||||||| | |||| | Sbjct 135630 TCGACTTGTAGGTCTCACAGTCAAGCTTCCTTATGCCTTTACACTCTAGATACGATTTCT 135689 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| | |||| |||||||| |||||||||||| ||||||||| | |||||||||| Sbjct 135690 AACCGTTCAGAGGAAACCTTTGTACGCCTCCGTTACCGTTTGGGAGG-CGACCGCCCCAG 135748 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATC--- 177 | ||||| ||| || | ||||||| |||||| ||| ||| |||||| ||| Sbjct 135749 TCAAACTGCCCGCCTGAAACTGTCCTTTGACCAGATAATGATTCAAAGTTAGAAATCTAA 135808 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCAT 234 || ||| |||||||||| ||| | | ||||| | |||| || | || Sbjct 135809 CATTACA---AGAGTGGTATCTCACTGATGGCTCCAATAATCCCACAAGATTATAATCAA 135865 Query 235 CATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 || ||||||||||| || | | || | ||| |||| |||| || ||| || Sbjct 135866 CAC---CTCCCACCTATACTGCGCGAATAAAGTCCAATTTCAATTTCAAGTTACAGTAAA 135922 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||||| || | | ||||||| || | | ||| Sbjct 135923 GCTTCATAGGGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTATT 135982 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||| ||| | ||||||| | | || ||||||| ||||||| ||||||||| Sbjct 135983 TCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATTACGCCTTTCGTGCGGGTCGGAAC 136042 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 136043 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCAG 136102 Query 474 GGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCA-CGAGTCCTCTTAACCTTCC 532 ||||||| ||| | || || | | |||| | | | | || ||||||||| Sbjct 136103 GGCTTCAGTTATCAGCTTCGC----------GAATGCTAACCAACTTCT-TTAACCTTCT 136151 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||| ||||||||||||| || |||| ||| Sbjct 136152 GGCACTGGGCAGGCGTCAGCCCCCATACATCG 136183 >seq43102 Length=56976 Score = 248 bits (274), Expect = 3e-63 Identities = 402/572 (70%), Gaps = 26/572 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||| |||||||||| |||| ||| |||||||| | |||| | Sbjct 17170 TCGACTTGTAGGTCTCACAGTCAAGCTTCCTTATGCCTTTACACTCTAGATACGATTTCT 17111 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| | |||| |||||||| |||||||||||| ||||||||| | |||||||||| Sbjct 17110 AACCGTTCAGAGGAAACCTTTGTACGCCTCCGTTACCGTTTGGGAGG-CGACCGCCCCAG 17052 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATC--- 177 | ||||| ||| || | ||||||| |||||| ||| ||| |||||| ||| Sbjct 17051 TCAAACTGCCCGCCTGAAACTGTCCTTTGACCAGATAATGATTCAAAGTTAGAAATCTAA 16992 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCAT 234 || ||| |||||||||| ||| | | ||||| | |||| || | || Sbjct 16991 CATTACA---AGAGTGGTATCTCACTGATGGCTCCAATAATCCCACAAGATTATAATCAA 16935 Query 235 CATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 || ||||||||||| || | | || | ||| |||| |||| || ||| || Sbjct 16934 CAC---CTCCCACCTATACTGCGCGAATAAAGTCCAATTTCAATTTCAAGTTACAGTAAA 16878 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||||| || | | ||||||| || | | ||| Sbjct 16877 GCTTCATAGGGTCTTTCTGTCCTGGTGCAGGTAGTCCGCATCTTCACAGACAAGTCTATT 16818 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||| ||| | ||||||| | | || ||||||| ||||||| ||||||||| Sbjct 16817 TCACCGAGCCCCTCTCCGAGACAGTATCCAAATCATTACGCCTTTCGTGCGGGTCGGAAC 16758 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 16757 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCAG 16698 Query 474 GGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCA-CGAGTCCTCTTAACCTTCC 532 ||||||| ||| | || || | | |||| | | | | || ||||||||| Sbjct 16697 GGCTTCAGTTATCAGCTTCGC----------GAATGCTAACCAACTTCT-TTAACCTTCT 16649 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||| ||||||||||||| || |||| ||| Sbjct 16648 GGCACTGGGCAGGCGTCAGCCCCCATACATCG 16617 >seq38168 Length=32109 Score = 111 bits (122), Expect = 5e-22 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 285 CTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCG 343 ||||||| || || | | |||||||| |||| ||| | ||| | ||||||| || | Sbjct 3435 CTATAGTAAAAGTGCACAGGGTCTTTCCGTCTAGCCACAAGAAGCCTGCATCTTCACAGG 3376 Query 344 TACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGC 403 | | ||||||||| | | | | ||||||| ||| |||||||||||||||| ||| Sbjct 3375 CATTTCAATTTCACTGAGATTACATTGGAGACAGTAGGACAGTCGTTACGCCATTCATGC 3316 Query 404 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGC 463 ||| | | ||| | ||||||||||||||||||| ||| || | |||| |||| Sbjct 3315 AGGACACCAATTAAATGCCAAGGAATTTCGCTACCTTTGGACCGTCAAGTTTACAGCCGC 3256 Query 464 CGTTTACTGGG 474 ||||||||||| Sbjct 3255 CGTTTACTGGG 3245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701533614592