Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq50892 145 2e-32 seq43102 145 2e-32 seq38168 75.2 2e-11 >seq50892 Length=141790 Score = 145 bits (160), Expect = 2e-32 Identities = 171/231 (74%), Gaps = 18/231 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | ||||||| ||| Sbjct 72831 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTACA--------------CGT 72786 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||||| | |||||| |||||||| || ||| | || ||| |||||| Sbjct 72785 C--ATTAATTCCTCCCTGAAAAAAGAGGTTTACAACCCATAGG-CAGTCTTCCCTCACGC 72729 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 72728 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 72669 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 |||| |||||||||||||||||||| |||| || | |||||||| |||| Sbjct 72668 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGTCTGATCGTCCTCTCA-AACC 72619 Score = 145 bits (160), Expect = 2e-32 Identities = 171/231 (74%), Gaps = 18/231 (8%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | ||||||| ||| Sbjct 139258 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTACA--------------CGT 139303 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||||| | |||||| |||||||| || ||| | || ||| |||||| Sbjct 139304 C--ATTAATTCCTCCCTGAAAAAAGAGGTTTACAACCCATAGG-CAGTCTTCCCTCACGC 139360 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 139361 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 139420 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 |||| |||||||||||||||||||| |||| || | |||||||| |||| Sbjct 139421 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGTCTGATCGTCCTCTCA-AACC 139470 >seq43102 Length=56976 Score = 145 bits (160), Expect = 2e-32 Identities = 171/231 (74%), Gaps = 18/231 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | ||||||| ||| Sbjct 13542 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGGTACA--------------CGT 13497 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||||| | |||||| |||||||| || ||| | || ||| |||||| Sbjct 13496 C--ATTAATTCCTCCCTGAAAAAAGAGGTTTACAACCCATAGG-CAGTCTTCCCTCACGC 13440 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 13439 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 13380 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 |||| |||||||||||||||||||| |||| || | |||||||| |||| Sbjct 13379 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGTCTGATCGTCCTCTCA-AACC 13330 >seq38168 Length=32109 Score = 75.2 bits (82), Expect = 2e-11 Identities = 93/127 (73%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| ||| ||| |||| |||| ||||||||||||||||||| || | || | Sbjct 4707 GCTGGATCAAACTTTCGTTAATTGTCCAATATTCCTCACTGCTGGCT---AAAATAGCCT 4651 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 ||||| ||||||||||||| ||||| | | ||||| || | ||| ||| |||| Sbjct 4650 GGACCTTGTCTCAGTTCCAGTGTGGTTGCACACCCTCTTAGGCCAACTAAAGATCATAGG 4591 Query 247 CTAGGTG 253 || |||| Sbjct 4590 CTTGGTG 4584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068256066304