Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq25219 515 1e-143 >seq25219 Length=11430 Score = 515 bits (570), Expect = 1e-143 Identities = 423/507 (83%), Gaps = 6/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | ||||| || |||| | || |||||||||||||||||| Sbjct 5263 GTTCTCATTCCAATTGCCAGACCTGTAAAGGCCCGGCATTGTTATTTATTGTCACTACCT 5204 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5203 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 5144 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||| |||| |||||| ||||||||||| | |||||||| Sbjct 5143 TCTCAGGCTCCCTCTCCGAAATCTTGCCCTAACAATTCGTTACCCGTTAAAGCCATGGTA 5084 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||| || |||||||| |||| |||||||||||||| |||||||| |||||||| | Sbjct 5083 GTCCAATACACTACCATCCAAAGCTGATAGGGCAGAAACTTGAATGATCCATCGCCTCCA 5024 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGG 299 || || |||||||||| ||||||||||||||||||| | | | |||||| | | || Sbjct 5023 CAGGGGAATGCGATTCGAAAAGTTATTATGAATCACCAGATCAACGCCGAAGCGTGAAGG 4964 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||| || ||||||||||| ||||||| |||||||| | | ||||||||||||||| Sbjct 4963 -TTTATACCTAATAAATACCACCCTTCCAAAAGTCGGGTGTAGTTGCATGTATTAGCTCT 4905 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||| |||| |||||| ||||||||| ||||||||| |||| ||||||||| |||| Sbjct 4904 AGAATTACTACGGATATCCAAGTAGTAAGGGACTATCAAAGAAACTATAACTGATATAAT 4845 Query 419 GAGCCATTCGCAG-TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||| ||||||| ||||| ||| | | | |||||||||||||||||||||||||||| Sbjct 4844 GAGCCGTTCGCAGTTTTCAAAGTA-AAAGAG-TTATACTTAGACATGCATGGCTTAATCT 4787 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||| ||||||||||||||| Sbjct 4786 TTGAGACGAGCGTATGACTACTGGCAG 4760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509631327232