Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq45459 143 2e-29 seq48315 114 1e-20 seq2764 93.3 3e-14 >seq45459 Length=4245 Score = 143 bits (158), Expect = 2e-29 Identities = 481/738 (65%), Gaps = 23/738 (3%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||||| |||||| | ||| || Sbjct 2717 ATATGGCAAATGTACAAGAAGGCAGAGGCATCATTCTGGACGGCCGAGGAGATTGATCTG 2776 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || | ||| | || |||||||| | || ||| | ||| ||||| | || Sbjct 2777 GCCGAGGACTTAAAGGACTGGGACGGCTTGACGAACAACGAAAGGCATTTTGTCTCCCAC 2836 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATT--GGAACGTT 61264 | | || ||||| || || || |||||||| ||||| ||||| ||| ||||| | Sbjct 2837 ATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAAC--T 2894 Query 61265 TCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGG 61324 |||| ||||| ||| | ||||| | ||||||||||| || || |||||| | | Sbjct 2895 TCGCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCCGTTG 2954 Query 61325 AGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGG 61384 | || | ||| |||| || | || ||||| || ||||| | ||| | ||| | Sbjct 2955 AAAACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAGGCCG 3014 Query 61385 --AACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 || || || | |||| ||||||||||| | ||| || || || ||| | Sbjct 3015 ACAAGATGCAC--CTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAA 3072 Query 61443 TTGGGCCTTCAATTGGATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||||| | || ||| | || | | | || | || | || || | | || | Sbjct 3073 TTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCT-CTTTCGCGGAGCGGTGCATCGCCT 3131 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | |||||||| | || ||||| ||||| || ||| ||||| ||| | |||| Sbjct 3132 TCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTCAAGA 3191 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || || ||||| ||||| ||| || ||| | || || |||||||| || Sbjct 3192 AGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGAC 3251 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA----TCGTCCG-TC 61676 |||| || || ||||| | | | || | || | |||||||| | ||| Sbjct 3252 TGCACTGCGACTTTGCCTGTCTCC--TTTACTCG-AAACTGGTGAACAAGGTGCCCGAAA 3308 Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 | |||| ||| |||||||| | || || ||||| |||| ||| | Sbjct 3309 GCAGGATCGT-----CGAGATTGTAACCCACGCTGTCGAGATCGAGAAGGAGTTTGTCGT 3363 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 ||||| | || || ||| ||||||||||| | || || |||| ||||| ||||| Sbjct 3364 CGACGCACTTCCTGTTGAACTTATCGGCATGAACTCGGGCCTCATGTGCCAGTACATTGA 3423 Query 61797 ATTTGTTGCCGACCGTCT 61814 || |||||||||||| Sbjct 3424 GTTCTGTGCCGACCGTCT 3441 >seq48315 Length=10477 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||| |||||||| || || | || | | | ||| | Sbjct 2256 CATGAACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTCGCCCTCTCCATCTCGTT 2197 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||||| || || | | ||||||||| | |||||||| || ||||| || || | ||| Sbjct 2196 CCCGTGGTTCTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGCTCGATGTA 2137 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 |||| ||| ||| | | || ||||| || ||||||||||| || || ||||| Sbjct 2136 CGCCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGTT 2077 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 |||||| || | ||| || |||| ||||| || |||| || ||||| Sbjct 2076 GAAGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCC 2029 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 || ||||||| |||| | || || |||||||| || || |||||||| || || Sbjct 2704 ACGAACTTGGAGAGGGAGATGGACGCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTG 2645 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||||||| |||||||| || || ||| || ||||| | ||||| || || Sbjct 2644 TACTCGACAATCTCGGTGCAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTC 2585 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| ||||| |||||||| | |||||| || ||||||||||| || ||||| Sbjct 2584 GACTTGCCGTTGCAGTGGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGACCTGGGAG 2525 Query 66173 TCAATGATGGCGTGCCAAAG 66192 || | ||||||| ||| || Sbjct 2524 TCGAGGATGGCGAACCAGAG 2505 >seq2764 Length=7933 Score = 93.3 bits (102), Expect = 3e-14 Identities = 463/726 (64%), Gaps = 20/726 (3%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGA-ACGTTTCGCGCA 61271 |||||||| || | ||||||| ||||| | || || | |||| | |||| || Sbjct 4419 GCGTTCTTCGCGGGCGCGGACGGGATCGTGATGGAAAACCTCGTGGAGAGGTTTTGCAG- 4361 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 |||||| ||| ||||||| || || ||||||||||||||||| |||||||| | | Sbjct 4360 GGAGGTTACCGTGCCGGAGGCTCGGTGCTTCTACGGCTTCCAGATGGCCATGGAAAGCAT 4301 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||| ||||| ||| |||| |||||| |||||||| || | | ||| | || Sbjct 4300 CCACCAGGAGACGTATTCACTTCTGATCGATTCGTACATCGACGACCCGAAGGAGAGGGA 4241 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 |||| || | ||| | || || || |||| ||| ||||| Sbjct 4240 GGTCCTGTTTTCGGCGCACTCGACCGTGCCAAGTGTCGAGAGGAAGGCGATATGGGCGCA 4181 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 || | ||| || |||| || || || | || | | | || || || || Sbjct 4180 GAAGTATATCGGGAG--CAAC-GCGACTTTCGCCGAGAGGCTAATCGCCTTCGCTACTGT 4124 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 ||||| |||| ||| || || || || || || ||| ||||||| || || || Sbjct 4123 TGAGGGGATATTCTTCTCGGGGTCCTTCTGTGCCATATTCTGGCTGAAGAAGCGGGGTCT 4064 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| |||||| |||| || |||||||| |||| || Sbjct 4063 CATGCCTGGACTCACCTTCTCGAATGAGCTGATCAGTCGAGACGAGGGGTTGCACTGCTC 4004 Query 61632 TTTTGCTGTTTTGC--TATT-CAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||| | || |||| ||||| | | || | | || |||||| | | Sbjct 4003 ATTTGCGTGTCAGCTGTATTCCAAACTCAA------AAACAAGCTGACGCAGGAGCATAT 3950 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTG 61746 | || | | || || ||| | ||||| || || |||| || || | Sbjct 3949 CAATCGCATAATAAGAGAAGCAGTAGATGTCGAAAAGAGCTTCATCTG--CGATGCGCTT 3892 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 |||||| | ||||| ||||||| || || ||| || ||||| || ||||| || Sbjct 3891 CCCGTCAGCTTGATCGGGATGAATTCAGGCCTCATGGGCCAATATATCGAGTTTGTGGCG 3832 Query 61807 GACCGTCTGTTGGTCGA-TTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || ||| || | ||| || ||||| | ||| | | || | | || || || || || Sbjct 3831 GATCGTATGCTCACCGACTTGGGGTACG-AGCCGCTTTACAGAAGCAAGAATCCGTTCGA 3773 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||||||||| || || |||||||| ||||| || ||||| | || ||||| Sbjct 3772 TTGGATGGACATGATCAGCCTTGAAGGCAAGACAAATTTCTTTGAGAAGAGGGTGGGCGA 3713 Query 61926 CTATCA 61931 ||||| Sbjct 3712 ATATCA 3707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397321409938880