Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5216 232 5e-56
seq236 168 5e-37
>seq5216
Length=2424
Score = 232 bits (256), Expect = 5e-56
Identities = 552/824 (67%), Gaps = 8/824 (1%)
Strand=Plus/Minus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
|| |||||| | ||| | || |||||||||||||| || | ||||||||| || |
Sbjct 1430 ACGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAG 1371
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
||||||| || ||||||||||| || | | ||| |||| | |||| || ||
Sbjct 1370 TACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTC 1311
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA- 66171
|||||| ||||| || |||||| | | |||| |||| ||||||||| | ||| |
Sbjct 1310 GACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAG 1251
Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG 66231
|||| ||| || ||| || | | || || || | | | ||| | | |
Sbjct 1250 CTCAG-GATCTGGTACCAGAGGTCCTGGGCGCGCATGGT-CTTGCGGCCGCGGCCCTCCT 1193
Query 66232 T-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA-TGGA 66289
| ||||| | |||||||| | | ||| || || | || || || || | | |
Sbjct 1192 TCTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGG 1133
Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349
| || || || || | || | ||| | | || ||||| ||||||| ||
Sbjct 1132 C-CTCGTTCGGGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGG 1074
Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409
|| || | |||||||||||||||||| ||||| || || |||||| ||||||| ||
Sbjct 1073 TCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 1014
Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469
||||| | || | ||| || || |||||| ||||| || || ||||| ||||||||
Sbjct 1013 TTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAG 954
Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529
|||||| | || |||||||| || ||||| |||||||| ||| | ||||||||| ||
Sbjct 953 GAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGA 894
Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589
| ||| || || | ||||| || | ||| ||||||||| ||| | | || ||
Sbjct 893 AGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCG 834
Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649
|| || | ||| | || | || || || ||||| ||| |||||| || ||
Sbjct 833 CGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTC 774
Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709
| | ||| |||| ||||| || || ||||| |||| ||| || |||| |||| |
Sbjct 773 TCGAGCGTCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCA-GCT 715
Query 66710 CTA-AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768
| | | ||| || ||| ||| |||| ||||||||| || || |||||||| ||| |
Sbjct 714 CGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAA 655
Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812
| | ||||| | ||| ||||||||| | ||| ||||
Sbjct 654 CTTCTGCGACATCATGTCGTAGGTCTCGATGGCGCGATCGATGT 611
>seq236
Length=1170
Score = 168 bits (186), Expect = 5e-37
Identities = 578/887 (65%), Gaps = 27/887 (3%)
Strand=Plus/Plus
Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGG--CGCATGTACAAAAAGGCGG 61111
|| ||||| | ||||| ||| || | |||| || ||| ||||| |||| ||||| |
Sbjct 235 CGCTTCGTGCTCTTCCCGATCCAGCACCAGGACATCTGGGACGCAT--ACAAGAAGGCCG 292
Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG- 61170
| || || |||||||||| |||||| | || || | | ||| ||| |||| ||
Sbjct 293 AGGCCTCGTTCTGGACGGCCGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGACT 352
Query 61171 CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230
| | | | || || || || || || | || || || |||| ||||| || | |||
Sbjct 353 CAATGACCAAG-GGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCG 411
Query 61231 GACGGTATCGTCAATGAGAATTTATTGGA--ACGTTTCGCGCAG-GAGGTGCAAGTGTCG 61287
||||| ||||| ||||| | | || || ||| |||| |||||| || |
Sbjct 412 GACGGCATCGTGCTCGAGAACGTCGTCGAGAACTTTT---GCAGCGAGGTGAGCCTGCCC 468
Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347
||||| || || ||||||||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct 469 GAGGCTCGCTGCTTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTAC 528
Query 61348 AGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAACGATTGTTCAATG 61405
| || ||||| || ||||| | | ||| || ||| | | | ||||| |
Sbjct 529 TCGCTCCTTATCGACACCTACATTCGCGACAGCAGGGAGAA--GGCCGGCCTCTTCAACG 586
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT----CAATTGGATC 61461
|| |||| ||| | || ||| | || ||| | |||||| | | |||| |
Sbjct 587 CCCTCGACACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGA-C 645
Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521
|| ||| | || || |||| || || | | | ||||||| |||||||| |
Sbjct 646 GGCA--ACATCTGC-ACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATC 702
Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581
|| ||| || || ||| ||| ||||| ||| | ||||| || || || ||||| |||
Sbjct 703 TTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGT 762
Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641
|| |||||| ||||||| |||| ||||||||||||||||| || ||||||
Sbjct 763 CTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGC 822
Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701
|||| ||| ||| | || | || | || |||| || ||| ||||| |
Sbjct 823 CTGCTCTTC---CGCAAGCTCATCAACCCGCCCAGCGAGGCCCGCGTGCACGAGATCATC 879
Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761
|| || ||||| || || | | ||||| | |||||| |||||
Sbjct 880 AAGTCCGCCGTCGAGATCGAGTGCGACTTCATCTCGGACGCGCTCCCCGTCGAGCTCATT 939
Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821
|||||||| | | || ||| |||||| || | || || || ||||| || |
Sbjct 940 GGCATGAACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGACCGCCTCGTCAAG 999
Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881
| | | || ||| ||||| | | ||||| ||||| | |||||| ||||
Sbjct 1000 GCTCTCGGCTGCAAGGCCATCTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTGATC 1059
Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928
|| || | |||||||| || |||||||| || || || ||||| ||
Sbjct 1060 TCCATGCAGGGCAAGACCAACTTTTTCGAAAAGCGCGTCGGCGAGTA 1106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397515844544960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |