Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5216 232 5e-56 seq236 168 5e-37 >seq5216 Length=2424 Score = 232 bits (256), Expect = 5e-56 Identities = 552/824 (67%), Gaps = 8/824 (1%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 || |||||| | ||| | || |||||||||||||| || | ||||||||| || | Sbjct 1430 ACGAACTTGCGCAGGTTGATGGAGGCGAGGTTGCAGACGGCGACCTCGTCAGGGGCCGAG 1371 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| || ||||||||||| || | | ||| |||| | |||| || || Sbjct 1370 TACTCGATGATCTCGGTGCACAGGTTCGAGGACTTGATGATGCCGAGGTTCTTCTGGTTC 1311 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA- 66171 |||||| ||||| || |||||| | | |||| |||| ||||||||| | ||| | Sbjct 1310 GACTTGCGGTTGCAGGCGTCCTTGAAGAGCATGAACGGCACGCCGGTCTCGATCTGGCAG 1251 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG 66231 |||| ||| || ||| || | | || || || | | | ||| | | | Sbjct 1250 CTCAG-GATCTGGTACCAGAGGTCCTGGGCGCGCATGGT-CTTGCGGCCGCGGCCCTCCT 1193 Query 66232 T-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA-TGGA 66289 | ||||| | |||||||| | | ||| || || | || || || || | | | Sbjct 1192 TCTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCGTAGACATCCGAGAGGCCCTTGG 1133 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 | || || || || | || | ||| | | || ||||| ||||||| || Sbjct 1132 C-CTCGTTCGGGCAGAAGAGGGTCCAGGTGCTGTTGGCCTCGACACGCTGCATAAAAAGG 1074 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || | |||||||||||||||||| ||||| || || |||||| ||||||| || Sbjct 1073 TCGGGGACCCAGAGGGCGTAGAAGAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 1014 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 ||||| | || | ||| || || |||||| ||||| || || ||||| |||||||| Sbjct 1013 TTGCGGAGCTCAATGAAGTCCTCGACGTCGGCGTGCCAAGGCTCGAGGTACATGGCGAAG 954 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 |||||| | || |||||||| || ||||| |||||||| ||| | ||||||||| || Sbjct 953 GAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCGGTGTCGTTGAAGACGCGA 894 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || || | ||||| || | ||| ||||||||| ||| | | || || Sbjct 893 AGCATAGGCACAATGCCGTTCGACTGGCCGTTGGTGCCGGCGACGTAGCTGCCCGAGGCG 834 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCG 66649 || || | ||| | || | || || || ||||| ||| |||||| || || Sbjct 833 CGGATGTTGTGGATGTTGACGCCGATGCCGCCGGCGTACTTGGAGATGCGCGCGCAGGTC 774 Query 66650 GCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAA 66709 | | ||| |||| ||||| || || ||||| |||| ||| || |||| |||| | Sbjct 773 TCGAGCGTCTGGAAGATGCCCTCGATCGAGTCGTCCTTCATGTGCACGAGGAAGCA-GCT 715 Query 66710 CTA-AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 | | | ||| || ||| ||| |||| ||||||||| || || |||||||| ||| | Sbjct 714 CGACATTTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGCGTGAAGAA 655 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 | | ||||| | ||| ||||||||| | ||| |||| Sbjct 654 CTTCTGCGACATCATGTCGTAGGTCTCGATGGCGCGATCGATGT 611 >seq236 Length=1170 Score = 168 bits (186), Expect = 5e-37 Identities = 578/887 (65%), Gaps = 27/887 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGG--CGCATGTACAAAAAGGCGG 61111 || ||||| | ||||| ||| || | |||| || ||| ||||| |||| ||||| | Sbjct 235 CGCTTCGTGCTCTTCCCGATCCAGCACCAGGACATCTGGGACGCAT--ACAAGAAGGCCG 292 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG- 61170 | || || |||||||||| |||||| | || || | | ||| ||| |||| || Sbjct 293 AGGCCTCGTTCTGGACGGCCGAGGAGATGGACCTGGGCCAGGACCAGAAGGACTTTGACT 352 Query 61171 CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | | || || || || || || | || || || |||| ||||| || | ||| Sbjct 353 CAATGACCAAG-GGCGAGCAGCACTTTGTCAAGCACGTCCTGGCCTTCTTCGCGTCCTCG 411 Query 61231 GACGGTATCGTCAATGAGAATTTATTGGA--ACGTTTCGCGCAG-GAGGTGCAAGTGTCG 61287 ||||| ||||| ||||| | | || || ||| |||| |||||| || | Sbjct 412 GACGGCATCGTGCTCGAGAACGTCGTCGAGAACTTTT---GCAGCGAGGTGAGCCTGCCC 468 Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| || || ||||||||||||||||| ||||| ||||| ||||||| ||| ||||| Sbjct 469 GAGGCTCGCTGCTTCTACGGCTTCCAGATGGCCATCGAGAACATCCACTCCGAGGTGTAC 528 Query 61348 AGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAACGATTGTTCAATG 61405 | || ||||| || ||||| | | ||| || ||| | | | ||||| | Sbjct 529 TCGCTCCTTATCGACACCTACATTCGCGACAGCAGGGAGAA--GGCCGGCCTCTTCAACG 586 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT----CAATTGGATC 61461 || |||| ||| | || ||| | || ||| | |||||| | | |||| | Sbjct 587 CCCTCGACACGCTGCCCTGCGTGCGCCAAAAGGCGCAGTGGGCCATGCGCTACATGGA-C 645 Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 || ||| | || || |||| || || | | | ||||||| |||||||| | Sbjct 646 GGCA--ACATCTGC-ACCTTTGCCGAGCGCCTCGTCGGTTTTGCGGCCGTCGAGGGCATC 702 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||| || || ||| ||| ||||| ||| | ||||| || || || ||||| ||| Sbjct 703 TTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGT 762 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 || |||||| ||||||| |||| ||||||||||||||||| || |||||| Sbjct 763 CTCACCTTCTCCAATGAGATGATCAGCCGCGACGAGGGCATGCACACCGACTTTGCTTGC 822 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 |||| ||| ||| | || | || | || |||| || ||| ||||| | Sbjct 823 CTGCTCTTC---CGCAAGCTCATCAACCCGCCCAGCGAGGCCCGCGTGCACGAGATCATC 879 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || || ||||| || || | | ||||| | |||||| ||||| Sbjct 880 AAGTCCGCCGTCGAGATCGAGTGCGACTTCATCTCGGACGCGCTCCCCGTCGAGCTCATT 939 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| | | || ||| |||||| || | || || || ||||| || | Sbjct 940 GGCATGAACTCCAGCCTCATGCAGCAGTACATCAAGTTCGTCGCGGACCGCCTCGTCAAG 999 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | | | || ||| ||||| | | ||||| ||||| | |||||| |||| Sbjct 1000 GCTCTCGGCTGCAAGGCCATCTACGGCGTGCAGAACCCCTTTGACTGGATGGACCTGATC 1059 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || || | |||||||| || |||||||| || || || ||||| || Sbjct 1060 TCCATGCAGGGCAAGACCAACTTTTTCGAAAAGCGCGTCGGCGAGTA 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397515844544960