Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1
_202017-05-22] 10,764 sequences; 18,099,857 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq8364 141 4e-28
seq6249 134 6e-26
seq990 125 3e-23
seq3726 100 1e-15
seq8122 89.7 2e-12
seq9203 86.0 3e-11
seq3353 86.0 3e-11
>seq8364
Length=1074
Score = 141 bits (156), Expect = 4e-28
Identities = 166/222 (75%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 222465 CATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG-- 222522
||||||||| |||||||||||| | | ||| ||||||||| | || | || | |
Sbjct 615 CATCATCCAGCGCGACCTCAAGGCGCGGAACGTGCTCGTGGAC--CTGCACCTCAACGCC 672
Query 222523 AAGGTGGCCGACTTTGGGTTCGCGCGGATCAAG---GAAACCAACGCCACCATGACACGG 222579
|||||||||||||||||| || |||| ||||| || | ||||| ||||||
Sbjct 673 AAGGTGGCCGACTTTGGGCTCTCGCGTCTCAAGACCGAGGACGACGCCGGCATGACTGCC 732
Query 222580 TGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAG 222639
|||||||||||| |||||| || || ||||| ||| | |||| ||| || |||
Sbjct 733 TGCGGCACGCCGGCCTGGACCGCGCCGGAGATTGTCAAGCTCGAGCAGTACGATGAAAAG 792
Query 222640 GCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATC 222681
| ||||| ||||||||||||||| ||||||||||| |||||
Sbjct 793 GTGGACGTTTACTCGTTCGGCATCGTCATGTGGGAGCTCATC 834
Score = 100 bits (110), Expect = 1e-15
Identities = 131/179 (73%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 122212 CAAGGTGGCCGACTTTGGCTTTGCCCACATCAAG---GAGGAGAACGTCACCATGACCCG 122268
|||||||||||||||||| | | | ||||| ||||| ||| | ||||||
Sbjct 672 CAAGGTGGCCGACTTTGGGCTCTCGCGTCTCAAGACCGAGGACGACGCCGGCATGACTGC 731
Query 122269 CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAAC--GAGAAGCACGACGAG 122326
| |||||||||| ||||| ||||| ||||| || || | ||| || |||| ||
Sbjct 732 CTGCGGCACGCCGGCCTGGACCGCGCCGGAGAT--TGTCAAGCTCGAGCAGTACGATGAA 789
Query 122327 AAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTCACCCGCAAGAAGCC 122385
||||||||||| |||||||| ||||||||| ||| || || || ||||| || ||||
Sbjct 790 AAGGTGGACGTTTACTCGTTCGGCATCGTCATGTGGGAGCTCATCGCCCGCGAGGAGCC 848
>seq6249
Length=3497
Score = 134 bits (148), Expect = 6e-26
Identities = 352/526 (67%), Gaps = 17/526 (3%)
Strand=Plus/Minus
Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698
|||||||||| ||| | || |||||||||| ||||||| || || ||||| | ||
Sbjct 3281 GGCGCCGTAGCCGATGAGGCAGTCGCGCTCCATCTCGCCCAGACGCAGACCGCCATCGCG 3222
Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTG 448758
| | ||||||||| ||||||||||| || | | | ||| || | | |||| |||
Sbjct 3221 CGAGCGGCCCTCGGTCGGCTGCCGCGTCAGCACGGCGCGCGGCCCGCGCGCGCGCGCGTG 3162
Query 448759 CATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACA--TG 448816
|||||| || | | ||| |||||||| | |||| || | | ||| || |||| | ||
Sbjct 3161 CATCTTGTCAGCGACCATGTGCTTGAGTCGCTGGTAGTACACGGGTCCGAAGAAGATGTG 3102
Query 448817 CGGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTCTTGCCCTCGGGCTCG 448876
|| | || || ||||||| || ||||||||| | || | |||||| | | ||
Sbjct 3101 CGCCTCGACA--GTCTCGCCGGTGATGCCGTCCGTTACGACCTCCTTGCCAT--GATACG 3046
Query 448877 ATCATGCCCCTCTCCTCCATGTAGTCCATGAGCTCGGCC---ACGGAGAGGTCCGAAAAG 448933
| ||||| | ||| ||| |||| |||| || | | |||| ||||
Sbjct 3045 A--GTGCCCGT-GCCTGACGAGCGTCTCGGAGC-AGGCCTTGACCGGGTTCTCCGCAAAG 2990
Query 448934 GCCGTGCCGTCCTGCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTGGAGGGCCTCGAGC 448993
|||||||||| ||| ||| ||||||| | ||| | ||| | ||| |
Sbjct 2989 GCCGTGCCGTACTGGCGCACGCCGCTCACCGCGCCAGCCTTGGAGCAAATCAGCTCCATG 2930
Query 448994 AACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGG--CG 449051
| | || | |||||||| |||| | | || |||||||||||||| ||||| ||
Sbjct 2929 AGCTTGCCCACAGTCATGCGGCTCGGGAATCCGTGGGGGTTCATGATGATATCGGGCACG 2870
Query 449052 TCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCT 449111
| | || | || | |||||||||||| | | || | |||||| ||||||||
Sbjct 2869 ATGCCCTGGTC-CG-TAAAGGGCATGTCCACCTGCGGCACGATGAGGCCGACGACGCCCT 2812
Query 449112 TCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCG 449157
| || |||||||| | |||||||||| ||| ||||| | ||||
Sbjct 2811 TTTGCCCGTGGCGCGAGGAGAACTTGTCGCCCAGCTCGATCATGCG 2766
>seq990
Length=4953
Score = 125 bits (138), Expect = 3e-23
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
||||||||| | ||||| || || || ||||||||||||| ||||||||||||||| ||
Sbjct 3360 CTCCTTGAGGCGGGGCACACCGAGCGTGACGTTCTTGGCCGAGACGCCGGCAAAGTGAAA 3301
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203
||| | ||| |||| ||||||| ||||||||||| ||||| | ||||| | |||
Sbjct 3300 GGTGTTGAGCGTCATCTGCGTGGCCGGCTCGCCGATCGACTGGGCGGCGAGCACGCCGCA 3241
Query 349204 CATCTCGCCGGG 349215
||||||||||||
Sbjct 3240 CATCTCGCCGGG 3229
>seq3726
Length=4572
Score = 100 bits (110), Expect = 1e-15
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132
|||| || |||||||||| | ||||| |||||| || |||||| || ||||||||||
Sbjct 3527 GCGTTGATGATCTCCTTGATGCGGGGCACGCCCAGCGTGACGTTCATGCTCGCGACGCCG 3468
Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCG 349192
|||||||||||||| | || |||| |||||| |||||||| | ||||| | ||
Sbjct 3467 GCAAAGTGGAAGGTTTTCAGAGTCATTTGCGTGCCAGGCTCGCCAAGAGACTGGGCGCCG 3408
Query 349193 AGGATGCCTACCATCTCGCCGGGCGCGG 349220
| | ||| || |||||| ||| |||
Sbjct 3407 ATGGCGCCGACGGCCTCGCCAGGCTCGG 3380
>seq8122
Length=2121
Score = 89.7 bits (98), Expect = 2e-12
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 21723 TCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGG 21782
|| || | ||| || ||||| | ||||| ||||| || | | ||| ||| ||||
Sbjct 1754 TCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGTGG 1695
Query 21783 TTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGGCGCCGACG 21842
||||||||||| || ||||| || || | || | ||||| ||| || |||||||||
Sbjct 1694 TTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGACG 1635
Query 21843 TCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGTGGCCC 21899
|||| |||||| | || || ||||| | || || |||||||||||| ||||
Sbjct 1634 TCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCC 1578
>seq9203
Length=6645
Score = 86.0 bits (94), Expect = 3e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 349096 GGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGT 349155
||| || ||||| |||||||| ||| || |||||||| |||||||| | ||||||
Sbjct 4365 GGGAATACCCAGCGTCACGTTGCCGGCGCCGTGGCCGGCAAGATGGAAGGTGTTGAGGGT 4306
Query 349156 CAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCGGG 349215
|| ||||| ||||||||||||| ||| |||||| | ||| || ||||||| ||
Sbjct 4305 CATTTGCGTACTCGGCTCGCCGATGCTCTGCGCCGCGATCACGCCCACGTTCTCGCCCGG 4246
Query 349216 CG 349217
||
Sbjct 4245 CG 4244
>seq3353
Length=1134
Score = 86.0 bits (94), Expect = 3e-11
Identities = 161/232 (69%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 222459 CCCGTCCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTC 222518
|||| |||| | |||||||||||||||||| ||||| || | | | | || |
Sbjct 567 CCCGCGCATCCTGCACCGCGACCTCAAGTCCGAGAACCT-CTTGCTCACCTCGCGCTTCC 625
Query 222519 GATG-AAGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAA-CCAACGCC--ACCATGA 222574
| || ||| | ||||||||||| || |||| || | || || |||| |||||||
Sbjct 626 GCTGCAAGCTCACCGACTTTGGGCTCTCGCGCGTCTACGAGGGCCGCCGCCGCACCATGA 685
Query 222575 CACGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCG 222634
| ||||| ||||| | |||| || |||||||| || | ||| ||| | ||
Sbjct 686 CCGTCTGCGGGACGCCCTGCTGGGTCGCGCCCGAGATTTTCCGCGGCGAGGCCTATAACG 745
Query 222635 AGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGG 222686
||||| |||||||||||| |||||| || | | ||||| || | |||||
Sbjct 746 AGAAGATCGACGTCTACTCCTTCGGCGTCGTGCTCTGGGAACTCTTTACGGG 797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084444673257672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |