Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustochytrium_20sp._20ATCC_2026185_20[genbank_20GCA_5F002154235.1 _202017-05-22] 10,764 sequences; 18,099,857 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq8364 141 4e-28 seq6249 134 6e-26 seq990 125 3e-23 seq3726 100 1e-15 seq8122 89.7 2e-12 seq9203 86.0 3e-11 seq3353 86.0 3e-11 >seq8364 Length=1074 Score = 141 bits (156), Expect = 4e-28 Identities = 166/222 (75%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 222465 CATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG-- 222522 ||||||||| |||||||||||| | | ||| ||||||||| | || | || | | Sbjct 615 CATCATCCAGCGCGACCTCAAGGCGCGGAACGTGCTCGTGGAC--CTGCACCTCAACGCC 672 Query 222523 AAGGTGGCCGACTTTGGGTTCGCGCGGATCAAG---GAAACCAACGCCACCATGACACGG 222579 |||||||||||||||||| || |||| ||||| || | ||||| |||||| Sbjct 673 AAGGTGGCCGACTTTGGGCTCTCGCGTCTCAAGACCGAGGACGACGCCGGCATGACTGCC 732 Query 222580 TGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAGAAG 222639 |||||||||||| |||||| || || ||||| ||| | |||| ||| || ||| Sbjct 733 TGCGGCACGCCGGCCTGGACCGCGCCGGAGATTGTCAAGCTCGAGCAGTACGATGAAAAG 792 Query 222640 GCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATC 222681 | ||||| ||||||||||||||| ||||||||||| ||||| Sbjct 793 GTGGACGTTTACTCGTTCGGCATCGTCATGTGGGAGCTCATC 834 Score = 100 bits (110), Expect = 1e-15 Identities = 131/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 122212 CAAGGTGGCCGACTTTGGCTTTGCCCACATCAAG---GAGGAGAACGTCACCATGACCCG 122268 |||||||||||||||||| | | | ||||| ||||| ||| | |||||| Sbjct 672 CAAGGTGGCCGACTTTGGGCTCTCGCGTCTCAAGACCGAGGACGACGCCGGCATGACTGC 731 Query 122269 CGCCGGCACGCCGTGCTGGATGGCGCCCGAGATCATGCGAAAC--GAGAAGCACGACGAG 122326 | |||||||||| ||||| ||||| ||||| || || | ||| || |||| || Sbjct 732 CTGCGGCACGCCGGCCTGGACCGCGCCGGAGAT--TGTCAAGCTCGAGCAGTACGATGAA 789 Query 122327 AAGGTGGACGTCTACTCGTTTGGCATCGTCGCCTGGCAGATCGTCACCCGCAAGAAGCC 122385 ||||||||||| |||||||| ||||||||| ||| || || || ||||| || |||| Sbjct 790 AAGGTGGACGTTTACTCGTTCGGCATCGTCATGTGGGAGCTCATCGCCCGCGAGGAGCC 848 >seq6249 Length=3497 Score = 134 bits (148), Expect = 6e-26 Identities = 352/526 (67%), Gaps = 17/526 (3%) Strand=Plus/Minus Query 448639 GGCGCCGTAGGACTTGAAGGAGACGCGCTCCATGTCGCCCAATCGGAGCCCGCCGTGTCG 448698 |||||||||| ||| | || |||||||||| ||||||| || || ||||| | || Sbjct 3281 GGCGCCGTAGCCGATGAGGCAGTCGCGCTCCATCTCGCCCAGACGCAGACCGCCATCGCG 3222 Query 448699 CAACTTGCCCTCGGTGGGCTGCCGCGTGAGGAGCGAGTACGGTCCCCTCTGCCGCGTGTG 448758 | | ||||||||| ||||||||||| || | | | ||| || | | |||| ||| Sbjct 3221 CGAGCGGCCCTCGGTCGGCTGCCGCGTCAGCACGGCGCGCGGCCCGCGCGCGCGCGCGTG 3162 Query 448759 CATCTTCTCCGAGGCCAGTTGCTTGAGGCTCTGGAAGAAGAAGGGCGCGTAGAACA--TG 448816 |||||| || | | ||| |||||||| | |||| || | | ||| || |||| | || Sbjct 3161 CATCTTGTCAGCGACCATGTGCTTGAGTCGCTGGTAGTACACGGGTCCGAAGAAGATGTG 3102 Query 448817 CGGCACGGCATCATCTCGCCCGTCTGGCCGTCCGTAAAGATCGTCTTGCCCTCGGGCTCG 448876 || | || || ||||||| || ||||||||| | || | |||||| | | || Sbjct 3101 CGCCTCGACA--GTCTCGCCGGTGATGCCGTCCGTTACGACCTCCTTGCCAT--GATACG 3046 Query 448877 ATCATGCCCCTCTCCTCCATGTAGTCCATGAGCTCGGCC---ACGGAGAGGTCCGAAAAG 448933 | ||||| | ||| ||| |||| |||| || | | |||| |||| Sbjct 3045 A--GTGCCCGT-GCCTGACGAGCGTCTCGGAGC-AGGCCTTGACCGGGTTCTCCGCAAAG 2990 Query 448934 GCCGTGCCGTCCTGCGGCAAGCCGCTCTCACAGCCCGTGATGGCCTGGAGGGCCTCGAGC 448993 |||||||||| ||| ||| ||||||| | ||| | ||| | ||| | Sbjct 2989 GCCGTGCCGTACTGGCGCACGCCGCTCACCGCGCCAGCCTTGGAGCAAATCAGCTCCATG 2930 Query 448994 AACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGG--CG 449051 | | || | |||||||| |||| | | || |||||||||||||| ||||| || Sbjct 2929 AGCTTGCCCACAGTCATGCGGCTCGGGAATCCGTGGGGGTTCATGATGATATCGGGCACG 2870 Query 449052 TCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCT 449111 | | || | || | |||||||||||| | | || | |||||| |||||||| Sbjct 2869 ATGCCCTGGTC-CG-TAAAGGGCATGTCCACCTGCGGCACGATGAGGCCGACGACGCCCT 2812 Query 449112 TCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCG 449157 | || |||||||| | |||||||||| ||| ||||| | |||| Sbjct 2811 TTTGCCCGTGGCGCGAGGAGAACTTGTCGCCCAGCTCGATCATGCG 2766 >seq990 Length=4953 Score = 125 bits (138), Expect = 3e-23 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| || || || ||||||||||||| ||||||||||||||| || Sbjct 3360 CTCCTTGAGGCGGGGCACACCGAGCGTGACGTTCTTGGCCGAGACGCCGGCAAAGTGAAA 3301 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||| |||| ||||||| ||||||||||| ||||| | ||||| | ||| Sbjct 3300 GGTGTTGAGCGTCATCTGCGTGGCCGGCTCGCCGATCGACTGGGCGGCGAGCACGCCGCA 3241 Query 349204 CATCTCGCCGGG 349215 |||||||||||| Sbjct 3240 CATCTCGCCGGG 3229 >seq3726 Length=4572 Score = 100 bits (110), Expect = 1e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || |||||||||| | ||||| |||||| || |||||| || |||||||||| Sbjct 3527 GCGTTGATGATCTCCTTGATGCGGGGCACGCCCAGCGTGACGTTCATGCTCGCGACGCCG 3468 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCG 349192 |||||||||||||| | || |||| |||||| |||||||| | ||||| | || Sbjct 3467 GCAAAGTGGAAGGTTTTCAGAGTCATTTGCGTGCCAGGCTCGCCAAGAGACTGGGCGCCG 3408 Query 349193 AGGATGCCTACCATCTCGCCGGGCGCGG 349220 | | ||| || |||||| ||| ||| Sbjct 3407 ATGGCGCCGACGGCCTCGCCAGGCTCGG 3380 >seq8122 Length=2121 Score = 89.7 bits (98), Expect = 2e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 21723 TCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGTCAGAGTGG 21782 || || | ||| || ||||| | ||||| ||||| || | | ||| ||| |||| Sbjct 1754 TCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGTGG 1695 Query 21783 TTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGGCGCCGACG 21842 ||||||||||| || ||||| || || | || | ||||| ||| || ||||||||| Sbjct 1694 TTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGACG 1635 Query 21843 TCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGTGGCCC 21899 |||| |||||| | || || ||||| | || || |||||||||||| |||| Sbjct 1634 TCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCC 1578 >seq9203 Length=6645 Score = 86.0 bits (94), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 349096 GGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGT 349155 ||| || ||||| |||||||| ||| || |||||||| |||||||| | |||||| Sbjct 4365 GGGAATACCCAGCGTCACGTTGCCGGCGCCGTGGCCGGCAAGATGGAAGGTGTTGAGGGT 4306 Query 349156 CAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCGGG 349215 || ||||| ||||||||||||| ||| |||||| | ||| || ||||||| || Sbjct 4305 CATTTGCGTACTCGGCTCGCCGATGCTCTGCGCCGCGATCACGCCCACGTTCTCGCCCGG 4246 Query 349216 CG 349217 || Sbjct 4245 CG 4244 >seq3353 Length=1134 Score = 86.0 bits (94), Expect = 3e-11 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 222459 CCCGTCCATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTC 222518 |||| |||| | |||||||||||||||||| ||||| || | | | | || | Sbjct 567 CCCGCGCATCCTGCACCGCGACCTCAAGTCCGAGAACCT-CTTGCTCACCTCGCGCTTCC 625 Query 222519 GATG-AAGGTGGCCGACTTTGGGTTCGCGCGGATCAAGGAAA-CCAACGCC--ACCATGA 222574 | || ||| | ||||||||||| || |||| || | || || |||| ||||||| Sbjct 626 GCTGCAAGCTCACCGACTTTGGGCTCTCGCGCGTCTACGAGGGCCGCCGCCGCACCATGA 685 Query 222575 CACGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCG 222634 | ||||| ||||| | |||| || |||||||| || | ||| ||| | || Sbjct 686 CCGTCTGCGGGACGCCCTGCTGGGTCGCGCCCGAGATTTTCCGCGGCGAGGCCTATAACG 745 Query 222635 AGAAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAGGTCATCACGGG 222686 ||||| |||||||||||| |||||| || | | ||||| || | ||||| Sbjct 746 AGAAGATCGACGTCTACTCCTTCGGCGTCGTGCTCTGGGAACTCTTTACGGG 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084444673257672