Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2670 104 3e-20 seq2335 73.4 5e-11 >seq2670 Length=5650 Score = 104 bits (114), Expect = 3e-20 Identities = 175/253 (69%), Gaps = 28/253 (11%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || ||||| || ||||| | || ||| | ||| Sbjct 2367 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCATCTTACGAT-TTAGCAGAGTCCT 2309 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| ||| | ||||| ||| ||| || || | Sbjct 2308 GTGTTTTTATTAAACAGTCGCAACCCCCAATTCTGTGCCACC-------TCTTAAAA--- 2259 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 || | | || || | ||||||||||||||| | | ||||||||||| |||||| Sbjct 2258 -ATTTA-----AAAGGTACTCTTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTT 2205 Query 187 -AAC----------CACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 ||| || | || | | || ||||||| | ||| |||| | ||||||| Sbjct 2204 CAACATAATTATCTCATAATTATCTCATACACCTTAGTCTACTCGACCTATCTACCTGTG 2145 Query 236 TCGGTTTACGGTA 248 | |||||| |||| Sbjct 2144 TTGGTTTAGGGTA 2132 >seq2335 Length=2530 Score = 73.4 bits (80), Expect = 5e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 || || | ||||||| ||||||| | | ||||||||||| |||||| | || | || | Sbjct 1702 GGTACTCTTTCTCCCAAAGTTACAGAGTCATTTTGCCGAGTTCCTTCAACATAATTATCT 1643 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || ||||||| | ||| || | | |||||||| |||||| |||| Sbjct 1642 CATACACCTTAGTCTACTCGACATATCTACCTGTGTTGGTTTAGGGTA 1595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694364124909