Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3989 98.7 3e-18 seq4759 91.5 4e-16 >seq3989 Length=3129 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 ||||||| |||| || ||| |||||||||| | | |||||||||| | |||| ||| Sbjct 177 GCAAATCTT-TAAAATTTATCTTAGTTCGGATTATGGGCTGCAACTCGCCCATATAAAGT 119 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||||||||||||||| | | ||||||| | ||||||||| ||| Sbjct 118 TGGAATCGCTAGTAATCGCAAAACAGCATGTTGCGGTGAATATGTT 73 >seq4759 Length=661 Score = 91.5 bits (100), Expect = 4e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||| | ||||||| |||||||||||||||| |||||||||| |||| | |||| ||| Sbjct 102 ACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAGATGTTTGGTTTATTCCCTTAAC 43 Query 216 GAGCGCAACCCTTAAGCTTAGTTGC 240 ||||| ||||| || |||||||| Sbjct 42 GAGCGAAACCCCTATTTTTAGTTGC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503919791680