Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1169 114 4e-23 seq3757 84.2 7e-14 seq1139 77.0 1e-11 >seq1169 Length=9652 Score = 114 bits (126), Expect = 4e-23 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 301 GGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCT 360 |||| |||||||||| |||||| || ||||| || |||||| ||| |||||||| Sbjct 5279 GGGCGAAAGCCTGATCCAGCAATACCAAGTGAGTGAAGAAGGCTAATAGGTTGTAAAGCT 5338 Query 361 CTGTCCTCAAGGAAGATAAT-GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCC 419 || || | |||||||| || ||| |||||| | | |||| |||||||| | |||||| Sbjct 5339 CTTTCATTAAGGAAGAAAAAAGACAGTACTTAAAAAAGAAGTTCCGGCTAATTTCGTGCC 5398 Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 454 ||||||||||||||| || || || ||| |||| Sbjct 5399 AGCAGCCGCGGTAATTCGAGAGGAGCGAGCATTAT 5433 >seq3757 Length=4717 Score = 84.2 bits (92), Expect = 7e-14 Identities = 100/132 (76%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 369 AAGGAAGATAAT-GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCG 427 |||||||| || ||| |||||| | | |||| |||||||| | || | |||||||| Sbjct 4713 AAGGAAGAAAAAAGACAGTACTTAAAAAAGAAGTTCCGGCTAATTTTGT-CTAGCAGCCG 4655 Query 428 CGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGT 487 | |||||||| || || || ||||| || ||| | | || |||||||||| |||||| Sbjct 4654 CAGTAATACGAGAGGAGCGAGTGTTATTCGAAATGATTAGG-CGTAAAGGGTTTGTAGGT 4596 Query 488 GGTTTCTTAAGT 499 |||| |||||| Sbjct 4595 TGTTTTTTAAGT 4584 >seq1139 Length=6696 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 354 TAAAGCTCTGTCCTCAAGGAAGATAAT-GACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 || |||||| || | |||||||| || ||| |||||| | | |||| |||||||| | Sbjct 3286 TATAGCTCTTTCATTAAGGAAGAAAAAAGACAGTACTTAAAAAAGAAGTTCCGGCTAATT 3345 Query 413 ACGTGCCAGCAGCCGCGGTAATAC 436 ||||||||||||||||||||||| Sbjct 3346 TCGTGCCAGCAGCCGCGGTAATAC 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497520132992