Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3233 93.3 1e-16 seq3757 78.8 2e-12 seq1208 73.4 1e-10 >seq3233 Length=1520 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||||||| ||||| ||||||| |||||||| ||| ||||||||||||| ||||||||| Sbjct 1331 ACTGACATTGAGGAACGAAAGCTTGGGGAGCGAACGGGATTAGATACCCCGGTAGTCCAT 1272 Query 324 GCCGTAAACGATGA 337 || ||||||||||| Sbjct 1271 GCTGTAAACGATGA 1258 >seq3757 Length=4717 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/113 (76%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||| | | |||| |||||||| | || | ||||||||| |||||||| || || Sbjct 4695 TACTTAAAAAAGAAGTTCCGGCTAATTTTGT-CTAGCAGCCGCAGTAATACGAGAGGAGC 4637 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 || ||||| || ||| | | |||||||||||| |||||| |||| |||||| Sbjct 4636 GAGTGTTATTCGAAATGATTAGGCGTAAAGGGTTTGTAGGTTGTTTTTTAAGT 4584 >seq1208 Length=4120 Score = 73.4 bits (80), Expect = 1e-10 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 80 ||||| | |||||||||||||||||||||||| || || ||| |||| || ||| | | Sbjct 1801 GCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGAGCGAGCATTATTCGAAATGATT 1860 Query 81 GGGCGTAAAGGGT 93 |||||||||||| Sbjct 1861 AGGCGTAAAGGGT 1873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203135833344