Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq224 178 1e-39 seq2584 123 2e-23 >seq224 Length=84125 Score = 178 bits (196), Expect = 1e-39 Identities = 940/1466 (64%), Gaps = 60/1466 (4%) Strand=Plus/Minus Query 65120 AGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAAT 65179 || ||||||||||| ||||| || ||| |||||| || ||||||||||| | | | Sbjct 28852 AGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAGG-TGAG 28794 Query 65180 TTTGCATA-ATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG 65238 ||||| | | | || ||||| | ||| | ||||| ||| || ||| ||| | Sbjct 28793 TTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAATGC 28734 Query 65239 ACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTA 65298 ||||||||| ||||| | || | ||| | | | ||||| || |||||||| Sbjct 28733 ACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTTGTA 28674 Query 65299 CAGG-CGACG-TACCTCAATTGGAATCTCCTCAAT--GTCCTGGACTGAACCACGA-CGT 65353 | | | | ||| | ||||||| || ||| || || || ||||||| | | Sbjct 28673 AATGTCTTTGATACGTT--TTGGAATA--CTTAATACGTTTTGAACACTACCACGATCAT 28618 Query 65354 GCAATAATGCGATTACGCA--TCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAA 65411 | || ||| ||||||| | || | | ||| | ||||||| ||||| | || | Sbjct 28617 GTAA-AATTTGATTACGTACTTCAGCATT--CCAAAGACCCAAAGATATAAGTTCTTTCA 28561 Query 65412 CCAAGTGACGATTGATGAC--TTGGAACT-CGCCGGACAGTACACGACGGACATAGATGT 65468 ||| | ||| |||| ||| || | | || | || |||||||| || |||| Sbjct 28560 TCAAATAT---TTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGT 28504 Query 65469 TGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTG 65528 |||| || | ||||||| |||||| ||||||| |||||||| |||||||| || |||| Sbjct 28503 TGGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTG 28444 Query 65529 GCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATT 65588 |||| || || | ||| | || || || | || | | | | | ||| | | | Sbjct 28443 GCATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCAC-TTGAGCTTTGAGT 28385 Query 65589 CGT--CCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAG 65646 || |||||| ||| | | ||| | | || | ||| ||||||||| | ||| | Sbjct 28384 -GTAGCCCAGTCCCAAA--GATTTGTTGGAGAAA--CACC--CCACATATCATATTGGAA 28332 Query 65647 GGTTCCGATACTGGCCGGTGAACCGAGGAAAC-TATCGTACACTCCCTCCTCCTTGGCAA 65705 | | || | || | || || || | | || | ||||| || || ||||||| Sbjct 28331 GATACCTTTGCTTACAGGAGAGCCT-GCATACGTTTCGTATGGACCAAATTCTTTGGCAA 28273 Query 65706 GTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTT 65765 || | || || | | ||| ||||| || || || || | ||| |||| Sbjct 28272 TTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGAGTT 28213 Query 65766 CACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTT 65825 || ||| | || | || |||||| || | ||| | || || || |||| Sbjct 28212 TCTTGGCTTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTT 28153 Query 65826 GAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGT 65885 |||| |||||||| || ||||||||||||| |||| ||| | || || | ||||| Sbjct 28152 GAACACCAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGT 28093 Query 65886 AGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCA 65945 |||| ||||| || || | || |||||||| || || | | ||| ||| Sbjct 28092 AGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATGCA 28033 Query 65946 A-TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 | ||| | || ||||| || || ||| | || ||||| || | | Sbjct 28032 AATTGGTA-AAGTCAAA-----TAC-ACCATC---ATTG---------ACAAATTTTGAA 27992 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| ||||| | ||||| ||||| | || || ||||| |||| || | Sbjct 27991 AGAGCAATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATATTCGATAACT 27932 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| ||||| | || || || || || ||||| || ||| |||| Sbjct 27931 TCACAGCACAAGTTACTCGATTTAATAGTACCTAAGTTTTGTTGGTTCGATTTGGAATTG 27872 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||||| ||| || || || || || || | ||| || || | ||||| Sbjct 27871 CAAGCATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCA 27812 Query 66185 TGCCAAAGAGCGC-GTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTC 66243 ||| | | || | ||||| | || | || | ||||| ||| | | Sbjct 27811 AACCATA-ATTGCTGAGCCTTGATTGTCTTTCGAGCACGACCTTCAGATTCAAATTTGGT 27753 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA-GACATGGACACTTG-TGTGGA 66301 ||| | ||| || | ||||| || || | || || ||| | ||| Sbjct 27752 GTACAAAGCTTCAAATTCCTTGCCCCAGCAATCTTGCAAGCCA--GAAGCTTCATTTGGG 27695 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 || | || ||||||||||| ||| ||||| |||||| | |||||| ||||| Sbjct 27694 CAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCAC 27635 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 | ||| || |||||||| || || || || ||| |||| |||||||| | || Sbjct 27634 AAGGCATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCC 27575 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 | |||||||| || || |||||||||||||| || || ||||| ||||| ||| |||| Sbjct 27574 AAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGC 27515 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 || || ||||||||||| || ||||||||| || ||||| || || | ||| || | | Sbjct 27514 TTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATG 27455 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCC 66567 | ||||| ||| ||||||||| || Sbjct 27454 ATACCGTTCGATGAGCCATTGGTACC 27429 >seq2584 Length=5567 Score = 123 bits (136), Expect = 2e-23 Identities = 552/851 (65%), Gaps = 39/851 (5%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGA 61154 ||||| || || || |||||| || ||||| | || || | ||| ||||||| || Sbjct 3779 ATGTATAAGAAAGCTGAAGCTAGTTTTTGGACTGCAGAAGAATTAGATCTTGTCCAT-GA 3721 Query 61155 CATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 ||||| || ||| | ||| || | ||||| | || |||| ||||| |||| Sbjct 3720 TATGAAAGATTGGACAAAACTTACGGA-CAATGAACGATTCTTTATTACCCATGTATTGG 3662 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCG 61269 | || ||||| || ||||| ||||| || ||||| ||||| || ||| |||| Sbjct 3661 CATTTTTTGCAGCATCGGATGGTATTGTAAATGAAAATTTGGCCAT--GAATTTTTCCA- 3605 Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 | || || ||||| | || || | ||||| || || || || ||||| || || ||| Sbjct 3604 -ATGAAGTACAAGTACCTGAAGCTAGATGTTTTTATGGATTTCAAATTGCTATCGAAAAT 3546 Query 61330 GTCCACTCGGAGATGTACAGT-GTT-CTCATCGATACGTACATCAGGGAGCGGGCGGAAC 61387 | || || ||| || | | ||| ||||| ||||| || |||| ||| | |||| Sbjct 3545 ATTCATTC--AGAAGTTTATTCGTTGCTCATTGATACTTATATCAAGGACATTGTGGAAA 3488 Query 61388 GTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGG 61447 || || | || | || || || ||||| || || | || ||||| | |||| Sbjct 3487 AAGATCGTGTTTTGAGGGCTATTGATACGATTCCTTGTGTACAACGTAAAGCTAAATGGG 3428 Query 61448 CCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACG-ATTGCTGGCATTTGCG 61506 | | || ||| || | | || ||| | | || ||||| |||| | || ||||| Sbjct 3427 CTCTTAAATGGTGCAATGGCAAAATTGCTGCGTATGCAGAACGTATTG-TAGCCTTTGCT 3369 Query 61507 GTGGTCGAGGGTGTATT--TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | || || ||| | || |||||| |||| ||| | | ||||||||| | ||||||| Sbjct 3368 GCTGTTGAAGGTATTTTCTTTTCAG--GATCATTTTGCTCGATCTTTTGGCTCAAGAAAC 3311 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 |||| | ||||| ||| | | ||| || || | || || || || ||||| | | Sbjct 3310 GTGGTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATGAGGGTCTTC 3251 Query 61625 ATTGTGATTTTG-CTG--TTTTGCTATTCAAACGCT-ATCTGGTGAATCGTCCGTCGGAG 61680 ||||||| |||| ||| | || ||||| || ||| ||| || | || | Sbjct 3250 ATTGTGACTTTGCCTGCCTCATG-TATTCCAA-GCTCATC-----AACAAGCTTTCTAAC 3198 Query 61681 GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGAC 61740 || ||| | ||| ||| || | || || || | || ||| || ||||| | | || Sbjct 3197 GAACGTATTCATGAAATTATTGGGGATGCTGTTGCAATTGAAAAGCAATTTGTCTCGGAA 3138 Query 61741 GCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTT 61800 || | || || |||||| || ||||| | || |||| | || |||||||| Sbjct 3137 TCTCTTCCAGTAGAACTCATTGGTATGAACTCATCTCTCATGTGCGAATACATTGAATTC 3078 Query 61801 GTTGCCGA---CCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||| || || ||| | | | | || |||| | || ||| | || || Sbjct 3077 TGTGCTGATCGCCTTCTCCAAGCCCTTGGAGCTACCAAGC---TTTACAATGCCAAGAAT 3021 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 ||||| || | ||||||||||| || || | || ||||| || |||||||| || ||| Sbjct 3020 CCATTCGACTGGATGGACATGATATCTCTTCAAGGAAAGACCAACTTTTTCGAAAAGCGT 2961 Query 61918 GTAGGCGACTA 61928 || || || || Sbjct 2960 GTCGGTGAATA 2950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397542159695120