Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1141 230 4e-58 seq1103 228 1e-57 seq2503 201 2e-49 seq395 82.4 1e-13 seq45 77.0 5e-12 seq236 73.4 6e-11 >seq1141 Length=230261 Score = 230 bits (254), Expect = 4e-58 Identities = 202/248 (81%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 52566 TCAGTGTGACGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 52508 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | || Sbjct 52507 AATCT-CGTGTGGCTGAACGCCATTTGTCCCTCTAAGAAGTTGGACGCCGACCGCA--CG 52451 Query 136 ATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | || || |||||| | ||||| |||||||| ||||||||||||||||| Sbjct 52450 AGGCCGCGTAACTAGTTAGCATGCCGGAGTCTCTTTCGTTATTGGAATTAACCAGACAAA 52391 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| Sbjct 52390 TCGCTCCACCAACTAAGACCGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 52331 Query 251 AATCTGTC 258 |||||||| Sbjct 52330 AATCTGTC 52323 >seq1103 Length=227817 Score = 228 bits (252), Expect = 1e-57 Identities = 200/246 (81%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||| ||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 197292 TCAGTGTGGCGCTCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTT- 197350 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA-GTC 134 || || |||||| | ||| | |||||||||||| | || | || ||| | | Sbjct 197351 -AATCTCGTGTGGCTGAACACCACTTGTCCCTCTAAGACGTTAGACGCCTACCGCACGGG 197409 Query 135 GATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | || | ||| |||||| || | |||| |||| |||||| |||||||||||||||| Sbjct 197410 GCTGCGTAACTAGTTAGCATGTCAGAGTCTAGTTCATTATCGTAATTAACCAGACAAATT 197469 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 197470 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 197529 Query 253 TCTGTC 258 |||||| Sbjct 197530 TCTGTC 197535 >seq2503 Length=76087 Score = 201 bits (222), Expect = 2e-49 Identities = 198/252 (79%), Gaps = 18/252 (7%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||| |||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 45193 TCAGTGTGGCGCATGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TG 45251 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | | ||| | ||| | || ||||||||||| | | || | Sbjct 45252 AATCT-CGTGTAACTGAACACCACTTGTGCCTCTAAGAAGTTGGACGTTGAC-----TGC 45305 Query 136 ATGGGGC-------TATTTAGCAGG--TTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 ||||||| || |||||| | | || ||||||||||||||||||||||||||| Sbjct 45306 ATGGGGCCCGTAACTAGTTAGCATGCCTGAA--TCTCGTTCGTTATCGGAATTAACCAGA 45363 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||| Sbjct 45364 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAGTCGAGAAAGAGC 45423 Query 247 TATCAATCTGTC 258 |||||||||||| Sbjct 45424 TATCAATCTGTC 45435 >seq395 Length=478428 Score = 82.4 bits (90), Expect = 1e-13 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| ||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 417696 TCAGTGTGACGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 417638 Query 76 AAACT 80 || || Sbjct 417637 AATCT 417633 >seq45 Length=1157129 Score = 77.0 bits (84), Expect = 5e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 ||| ||||| ||||| |||||||||||||| | || ||| ||| ||||| ||| |||||| Sbjct 817932 ATTCACCAGGCAAATTACTCCACCAACTAAAAGCGACCACGCAACACCAACCACAGAATC 817991 Query 237 AAGAAAGAGCTATCAATCTGTC 258 | ||| | | ||||| ||||| Sbjct 817992 AGGAATAAACCATCAACCTGTC 818013 >seq236 Length=607901 Score = 73.4 bits (80), Expect = 6e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||| |||| |||| | ||||||||||||||||||||||||| |||| ||| Sbjct 162492 TCAGTGTGACGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTCATTG-CTC 162550 Query 76 AAACT 80 || || Sbjct 162551 AATCT 162555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796565234334