Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthochromis_20polyacanthus_20[refseq_20GCF_5F002109545.1_202017- 04-25] 30,414 sequences; 991,584,656 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3496 96.9 6e-18 SEQ16266 91.5 2e-16 seq881 87.8 3e-15 seq1849 86.0 1e-14 seq8006 77.0 5e-12 seq7991 77.0 5e-12 seq21 77.0 5e-12 seq239 73.4 6e-11 >seq3496 Length=36699 Score = 96.9 bits (106), Expect = 6e-18 Identities = 95/119 (80%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| |||||| | |||||| | ||||| | | | || |||| ||| || | Sbjct 30765 GTACGAGAGAAACCGCAGG-TTCAGAC-ATTTGGTGTATTTGCTTGGCTGAGCAGCCAAT 30708 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| |||||||| ||||| |||||||||||||||||| |||| Sbjct 30707 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC-TGCC 30650 >SEQ16266 Length=2583 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | ||||||| || | || ||| || |||| Sbjct 1157 GTACGAGAGGAACCGCACA-TTCTGAC-ATTTGGTTTATGTGCTTGGATGAGGAGCCAGT 1100 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct 1099 GGTGCAAAGCTACCATCTCTGGGATTATGACTGAACGCCTCAAAGTCAGAATCC 1046 >seq881 Length=377561 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 143327 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 143270 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | || || |||||||||| | |||||| |||||| ||||||||||||||||| |||| Sbjct 143269 GGTGCAAATCTACCATCTGTGGAATTATGACTGAACACCTCTAAGTCAGAATCC-TGCC 143212 >seq1849 Length=127788 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| || | ||||||| || | || ||| || |||| Sbjct 61969 GTACGAGAGGAACTGCACA-TTCTGAC-ATTTGGTTTATGTGCTTGGATGAGGAGCCAGT 61912 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| ||||||| ||| |||||||||||| Sbjct 61911 GGTGCAAAGCTACCATCTGTGGGATTATGACTGAACGACTCAAAGTCAGAATCC 61858 >seq8006 Length=7488 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| || | |||||| ||| | | | ||| || |||| | || | Sbjct 6096 GTACCAGAGGAACTGCAGG-TTCAGAC--ATTTGGTGTAGCGTTTGGCTGAGGAACCAAT 6152 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||| ||||||| |||||||| |||||||||| |||||||||||| Sbjct 6153 GATGCGAAGCTGCCATCTGTGGGATTATGACTGAACGCCTGTAAGTCAGAATC 6205 >seq7991 Length=7510 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| || | |||||| ||| | | | ||| || |||| | || | Sbjct 1393 GTACCAGAGGAACTGCAGG-TTCAGAC--ATTTGGTGTAGCGTTTGGCTGAGGAACCAAT 1337 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||| ||||||| |||||||| |||||||||| |||||||||||| Sbjct 1336 GATGCGAAGCTGCCATCTGTGGGATTATGACTGAACGCCTGTAAGTCAGAATC 1284 >seq21 Length=1380417 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| || | |||||| ||| | | | ||| || |||| | || | Sbjct 181237 GTACCAGAGGAACTGCAGG-TTCAGAC--ATTTGGTGTAGCGTTTGGCTGAGGAACCAAT 181181 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||| ||||||| |||||||| |||||||||| |||||||||||| Sbjct 181180 GATGCGAAGCTGCCATCTGTGGGATTATGACTGAACGCCTGTAAGTCAGAATC 181128 >seq239 Length=604629 Score = 73.4 bits (80), Expect = 6e-11 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| ||| |||| Sbjct 236155 TTGGTGTATGTGCATGGCTGAGGAGCCAATGGTGCGAAGCTACCATCTGTGGGACTATGA 236096 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 ||||| ||||||||||| |||||| |||| | ||| Sbjct 236095 CTGAATGCCTCTAAGTCGGAATCC-TGCCTGGACG 236062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818958634496