Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2690 167 1e-39 seq1829 98.7 6e-19 seq1817 95.1 7e-18 seq1794 91.5 8e-17 >seq2690 Length=7015 Score = 167 bits (184), Expect = 1e-39 Identities = 108/117 (92%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| || ||||||| ||||||||| || Sbjct 3390 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGCGTCAAAAA-ATAACATCGTCC 3448 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3449 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 3505 >seq1829 Length=67003 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| | || Sbjct 39688 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCACCG 39629 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 39628 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 39572 >seq1817 Length=85461 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| | ||| |||| Sbjct 44857 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCTGGCGGGTCATGGGAACAACGCCGCCG 44798 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 44797 GATCGCTAGTTGGCATTGTTTATGGTCGGAACTACAACGGTATCTGATCGTCTTCGA 44741 >seq1794 Length=89003 Score = 91.5 bits (100), Expect = 8e-17 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 64971 GAACCCAAAGACTTTGGTTTCCCGGA-GTTGCCCGGCGGGTCATGGGAATAACGCCGCCG 64913 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||| ||||| ||||| ||| |||||||||||||||||| |||||||| Sbjct 64912 GATTGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATTGTCTTCGA 64856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278382677430