Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2690 468 9e-130 seq1817 168 1e-39 seq1829 158 2e-36 seq1794 147 4e-33 seq2881 141 2e-31 seq1646 109 1e-21 seq1461 104 4e-20 seq538 82.4 1e-13 seq399 80.6 5e-13 seq323 77.0 6e-12 >seq2690 Length=7015 Score = 468 bits (518), Expect = 9e-130 Identities = 293/314 (93%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 3819 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCTCATGCCCTTCACTGGGTGTGACGGGGA 3760 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 3759 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 3700 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3699 TAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3640 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3639 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 3580 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 3579 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 3521 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 3520 ACGAAAGTTAGGGG 3507 >seq1817 Length=85461 Score = 168 bits (186), Expect = 1e-39 Identities = 212/284 (75%), Gaps = 13/284 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCG--GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| ||| |||| ||| ||| ||| || ||||||||||||||||||||||| Sbjct 44453 ATGCTCTTAGCTGAGTGTCCCGCCGGGGTCCAA-ACATTTACTTTGAAAAAATTAGAGTG 44511 Query 97 TTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| | || |||||| ||| |||||||| ||||||||| | ||| Sbjct 44512 TTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGG 44570 Query 155 TTCTATTTTGTTGGTTT-----CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGG 208 ||||||||||| ||||| || || | | | |||||||| |||||| | ||||| Sbjct 44571 TTCTATTTTGTGGGTTTTCTTTCTCTGAACTGGGGCCATGATTAAGAGGGATGGCCGGGG 44630 Query 209 GTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCG 268 | | ||||| | |||||||||||||||||| ||||| || | ||| Sbjct 44631 GCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCAGCGCAAGACGGACGAAAGCG 44690 Query 269 AAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| || ||||| |||||||||||||||| |||||||||| Sbjct 44691 AAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 44733 Score = 104 bits (114), Expect = 4e-20 Identities = 111/144 (77%), Gaps = 9/144 (6%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATG 131 |||||||||||||||||||||||||||||||||||| | || |||||| ||| | Sbjct 54952 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAGTCGCCTGAATACCGCAGCTAG 55011 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCT-----AGGACCGCCGTA 185 || |||| ||||||||| | |||||||||||||| || ||||| | || | | Sbjct 55012 GAGTAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTCTGAACAGGGGCC 55070 Query 186 ATGATTAATAGGGATAGTCGGGGG 209 |||||||| ||||| | |||||| Sbjct 55071 ATGATTAAGAGGGAYGGCCGGGGG 55094 >seq1829 Length=67003 Score = 158 bits (174), Expect = 2e-36 Identities = 210/285 (74%), Gaps = 14/285 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGT---GCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGT 95 |||| ||| ||| |||| ||||||| | | | | |||||||||||||||||||||| Sbjct 39283 ATGCTCTTAGCTGAGTGTCCCGCCGGGGTCCGAAG-CGTTTACTTTGAAAAAATTAGAGT 39341 Query 96 GTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||||||||||| | || |||||| ||| |||||||| ||||||||| | || Sbjct 39342 GTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCG 39400 Query 154 GTTCTATTTTGTTGG-TTTCT-----AGGACCGCCGTAATGATTAATAGGGATAGTCGGG 207 |||||||||||| || ||||| | || | | |||||||| ||||| | |||| Sbjct 39401 GTTCTATTTTGTGGGTTTTCTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGG 39460 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | ||||| | |||||||||||||||||| |||| || | || Sbjct 39461 GGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAGGGACAAAAGC 39520 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||| || ||||| |||||||||||||||| |||||||||| Sbjct 39521 GAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 39564 >seq1794 Length=89003 Score = 147 bits (162), Expect = 4e-33 Identities = 210/287 (73%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| ||| |||| ||| || | | | | | ||||||||||||||||||||||| Sbjct 64567 ATGCTCTTAGCTGAGTGTCCCGCTGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTG 64626 Query 97 TTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| | || || ||| ||| |||||||| ||||||||| | ||| Sbjct 64627 TTCAAAGCAGGCCCAGTCGCCTGAGTACCGCAGCTAGGAATAATGGAATAGGAC-TCCGG 64685 Query 155 TTCTATTTTGTTGG-TTTCT-----AGGACCGCCGTAATGATTAATAGGGATAGTCGGGG 208 ||||||||||| || ||||| | || | | |||||||| ||||| | ||||| Sbjct 64686 TTCTATTTTGTGGGTTTTCTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGG 64745 Query 209 GTGTCAGTATT---CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACT 265 | | ||||| | | | |||||||||||||||||| ||||| || | Sbjct 64746 GCATTCGTATTGTGCCACT---AGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAA 64802 Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||| || ||||| |||||||||||||||| ||| |||||| Sbjct 64803 GCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 64848 Score = 100 bits (110), Expect = 5e-19 Identities = 107/137 (78%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGT---GCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGT 95 |||| ||| ||| |||| ||||||| | | | | |||||||||||||||||||||| Sbjct 56864 ATGCTCTTAGCTGAGTGTTCCGCCGGGGTCCGAAG-CGTTTACTTTGAAAAAATTAGAGT 56922 Query 96 GTTCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| | || |||||| ||| ||| |||| ||||||||| | ||| Sbjct 56923 GTTCAAAGCAGGCTGGTCGCCTGAATACCGCAGCTAGGAGTAATGGAATAGGAC-TCCGG 56981 Query 155 TTCTATTTTGTTGGTTT 171 |||| |||||| ||||| Sbjct 56982 TTCTGTTTTGTGGGTTT 56998 >seq2881 Length=5659 Score = 141 bits (156), Expect = 2e-31 Identities = 199/273 (73%), Gaps = 15/273 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGT---GCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGT 95 |||| ||| ||| |||| ||||||| | | | | ||||||||||||||||||| | Sbjct 243 ATGCTCTTAGCTGAGTGTCCCGCCGGGGTCCGAAG-CGTTTACTTTGAAAAAATTAG--T 299 Query 96 GTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||||||||||| | || |||||| ||| |||||||| ||||||||| | || Sbjct 300 GTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCG 358 Query 154 GTTCTATTTTGTTGGTTT-----CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGG 207 |||||||||||| ||||| || || | | | |||||||| ||||| | |||| Sbjct 359 GTTCTATTTTGTGGGTTTTCTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGG 418 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | ||||| | |||||||||||||||||| ||||| || | || Sbjct 419 GGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGC 478 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||||| || ||||| |||||||||||||||| Sbjct 479 GAAAGCATTTGCCAAGAATGTTTTCATTAATCA 511 >seq1646 Length=871298 Score = 109 bits (120), Expect = 1e-21 Identities = 164/227 (72%), Gaps = 11/227 (5%) Strand=Plus/Minus Query 95 TGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGC 152 ||||||||||||| || | | |||||| ||| ||||||||| ||||||||| | | Sbjct 687796 TGTTCAAAGCAGGACTGGTCACCTGAATACTGCAGCTTGGAATAATGGAATAGGAC-TCC 687738 Query 153 GGTTCTATTTTGTTGG-TTTCTA-----GGACCGCCGTAATGATTAATAGGGATAGTCGG 206 ||||||||||||| || ||||| | || | | ||||| || |||||||| ||| Sbjct 687737 GGTTCTATTTTGTGGGCTTTCTCTCTCTGAACTGGGGCCATGATAAAGAGGGATAGCCGG 687678 Query 207 GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266 ||| | ||||| | |||||||||||||||||| | |||| | | | Sbjct 687677 GGGCATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCAGTGCAAGATTGAGGA-AA 687619 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 | ||||| || ||||| |||||||||||||||| || |||||||| Sbjct 687618 CAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGATCGAAAGTT 687573 >seq1461 Length=366368 Score = 104 bits (114), Expect = 4e-20 Identities = 134/180 (74%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA--TTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCA 129 ||| ||||||||||| ||||||| || ||||||| || |||| |||||| ||| Sbjct 164504 TTTCCTTTGAAAAAAAATTAGAGTATTTAAAGCAGACCCAGTTGCCAGAATACTGCAGCT 164563 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTA 185 |||||||| ||||||||| | ||||||||||||| | ||| || || | | | Sbjct 164564 AGGAATAATGGAATAGGAC-TCTGGTTCTATTTTGTGGATTTTCTCTCTGAACTGGGGCC 164622 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| |||||| | | |||| | ||||| ||| |||||||||||||||||| Sbjct 164623 ATGATTAAGAGGGATGGCCAGGGGCATTTGTATTGTGTTGCTAGAGGTGAAATTCTTGGA 164682 >seq538 Length=1550018 Score = 82.4 bits (90), Expect = 1e-13 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAAT-TAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCA 129 |||||||||||||||| ||||||||||||| |||| || ||| ||||| ||| Sbjct 1372945 TTTACTTTGAAAAAATAAAGAGTGTTCAAAGGCGGCCCAGTTGTCTC-AATACTGCAGCT 1373003 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||||| ||||||||| | ||| |||||||||| ||||| Sbjct 1373004 AGGAATAATGGAATAGGAC-TCCGGGTCTATTTTGTGGGTTT 1373044 >seq399 Length=104734 Score = 80.6 bits (88), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 8/123 (7%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGT---GCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGT 95 |||| ||| ||| |||| ||||||| | | | | |||||||| ||||||||||||| Sbjct 72868 ATGCTCTTACCTGAGTGTCCCGCCGGGGTCCGAAG-CGTTTACTTTTAAAAAATTAGAGT 72810 Query 96 GTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 |||||||||||||| || || |||||| ||| |||||||| |||||||| | || Sbjct 72809 GTTCAAAGCAGGCCCGGTTCCT-GAATACCGCAGCTAGGAATAATGTAATAGGAC-TCCG 72752 Query 154 GTT 156 ||| Sbjct 72751 GTT 72749 Score = 73.4 bits (80), Expect = 7e-11 Identities = 110/154 (71%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 153 GGTTCTATTTTGTTGGTTT-----CTAGGACCGCCGTA-ATGATTAATAGGGATAGTCGG 206 ||||||||||||| ||||| || || | | | |||||||| ||||| | ||| Sbjct 71486 GGTTCTATTTTGTGGGTTTTCTCTCTCTGAACTCAGGCCATGATTAAGAGGGACGGCCGG 71427 Query 207 GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266 ||| | ||||| | |||||||||||||||||| | ||||| || | | Sbjct 71426 GGGCATTGGTATTGCC--GCTAGAGGTGAAATTCTTGGACCTGCGCAAGACGGACGAAAG 71369 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||| || ||||| |||||||||||||||| Sbjct 71368 CGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 71335 >seq323 Length=94756 Score = 77.0 bits (84), Expect = 6e-12 Identities = 73/91 (80%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAG 140 ||||||||||||| ||||||||||||| |||| |||||| | | |||||||| | Sbjct 17469 AAAAAATTAGAGTATTCAAAGCAGGCCCGGTTGCCTGAATACTGCATCTAGGAATAATGG 17410 Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||||| | || ||||||||| | ||||| Sbjct 17409 AATAGGAC-TCCGATTCTATTTTATGGGTTT 17380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915139258176