Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2690 728 0.0 seq823 114 5e-23 seq323 86.0 3e-14 seq115 77.0 1e-11 >seq2690 Length=7015 Score = 728 bits (806), Expect = 0.0 Identities = 573/674 (85%), Gaps = 13/674 (2%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 1952 GCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATG 1893 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1892 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 1833 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| Sbjct 1832 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAG 1773 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 |||||||| | |||||||||| | | || ||| || || ||| || ||||||| Sbjct 1772 GGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTC-GCTGGTGCAC 1714 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCGG-GCGGTCGGATAAAGGCCCCGGGAATGTGG 310 | | | | | |||||||||||||| | || |||| |||||||||| ||||||||||| Sbjct 1713 TTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGG-GGGATAAAGGCTTCGGGAATGTGG 1655 Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370 | ||| |||||| ||||||||||||| ||| ||| | |||| |||||||||| ||| Sbjct 1654 CTCCCCTCGGGGAGTGTTATAGCCCGTTGTGTAATACCCTGCGCC-GGACTGAGGTACGC 1596 Query 371 GCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAG 430 ||||| || ||||||||||||||||||| | |||| ||||||||| ||||||||||||| Sbjct 1595 GCTCC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCAAG 1537 Query 431 GAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAAC 489 ||||| | || |||||||||||| |||||| |||||| | |||||||||||||||||| Sbjct 1536 GAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTAAAACCCCTACGCGTAATGAAAGTGAAC 1478 Query 490 GGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTG 549 | ||||| || | || ||| || |||||||||||||||| ||||||||||||| Sbjct 1477 GCAGGTGAGA----GCTTCGGCGCATCACCGACCGATCCTGATGTTCTCGGATGGATTTG 1422 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 |||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| Sbjct 1421 AGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGC 1362 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1361 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATAT 1302 Query 670 GGGTATAGGGGCGA 683 ||| || ||||||| Sbjct 1301 GGGCATGGGGGCGA 1288 >seq823 Length=129150 Score = 114 bits (126), Expect = 5e-23 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||| ||| | || || |||||| | ||||| ||||||| Sbjct 21423 GAGTCGGGTTGTTTGGGAATGTAGCCCAAAGCAGGTGGTAAACKYCATCTAARGCTAAAT 21364 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| | ||||||| | | ||||| |||| || |||||| | Sbjct 21363 ACTGGCACGAGACCGATAGAGAACAAGTACCATAAGGGAAAGTTGAAGAGAACTTTGAAG 21304 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 21303 AGAGAGTTCAACAGGGCGTGAAA 21281 >seq323 Length=94756 Score = 86.0 bits (94), Expect = 3e-14 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| ||| || | | ||||| | ||||| Sbjct 16448 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTGAACTCCATCTAAGGGTAAAT 16389 Query 100 ATTGGCCAGAGACC-GATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | |||| ||| || | | | ||||| | | | ||||| ||||||| |||||| | Sbjct 16388 ACTGGCATGAGTCCAGTAATTACCAAAGTACAATAAGGGAAAGCTGAAAAGAACTTTGAA 16329 Query 159 AAGAGAGTTAAA 170 |||||||| || Sbjct 16328 GAGAGAGTTCAA 16317 >seq115 Length=788868 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 || |||||||| ||||||||| |||| |||||||||||||||| | ||||||| | Sbjct 515489 AATGATGGTGAGCTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCCGTTGGAGGCCCTT 515548 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| | ||| |||||||| ||| || | ||||||||||||| Sbjct 515549 AGCAG-TCT--AGTGCAAATTGATTTTCCAGCCTGGGTATAGGGGC 515591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079857636350