Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq5308 628 6e-178 seq2676 141 2e-31 >seq5308 Length=1285 Score = 628 bits (696), Expect = 6e-178 Identities = 353/356 (99%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1226 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 TATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 1166 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 1106 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1105 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT 1046 Query 311 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1045 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTT 986 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 985 GCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 930 >seq2676 Length=7184 Score = 141 bits (156), Expect = 2e-31 Identities = 201/279 (72%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||||| | |||||||| Sbjct 5916 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 5857 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| |||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 5856 ATCGTTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 5797 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAGC 182 || | | |||| ||||||| || ||||||| ||| |||| | | || || Sbjct 5796 CCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCAACATCAAATAGTATTATATT 5738 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTT 241 ||| || |||||| |||||||||||||| |||||| ||||| | | ||| Sbjct 5737 TAATTATCTCTGTTAACCAGCCGGCACCGGGCAGATATCACACTTTATACATAGATTTTT 5678 Query 242 CGTGTTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | ||| ||| ||||||||||||| | |||||||||| Sbjct 5677 AATCTTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 5639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260716320704