Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq5308 215 1e-53 seq2676 84.2 5e-14 >seq5308 Length=1285 Score = 215 bits (238), Expect = 1e-53 Identities = 241/326 (74%), Gaps = 27/326 (8%) Strand=Plus/Minus Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1226 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 |||||||||||||||||||||| ||||||| | | |||||| | ||||| Sbjct 1225 TATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 1166 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | |||||||||| ||||||||||||||||| ||||||| || ||| || || || Sbjct 1165 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 1106 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT-AG- 302 ||| |||||||||| ||||||||||| ||||| | ||| || || | ||| || Sbjct 1105 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCATGAGC 1047 Query 303 ------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338 || ||| | ||||||||| ||||||||| | ||||| Sbjct 1046 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTT 987 Query 339 TGCCGAGTTCCTTAACAATAGTTCTC 364 |||| |||||||| || ||||||| Sbjct 986 TGCCTAGTTCCTTCACCCGAGTTCTC 961 >seq2676 Length=7184 Score = 84.2 bits (92), Expect = 5e-14 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||||| || | ||||||| |||||||| Sbjct 5908 ATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGTATCGTTAC 5849 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 5848 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 5790 Query 129 GTTACGGCCGCCGTTTACTGGGGCTT 154 |||| ||||||| || || |||| || Sbjct 5789 GTTAAGGCCGCCTTTAACCGGGGTTT 5764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062329488512