Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2690 367 2e-99 seq520 176 7e-42 seq677 154 2e-35 seq800 132 8e-29 seq362 113 7e-23 seq802 98.7 2e-18 seq1646 96.9 6e-18 seq1704 86.0 1e-14 seq1020 86.0 1e-14 seq12 86.0 1e-14 seq168 84.2 3e-14 seq1131 75.2 2e-11 >seq2690 Length=7015 Score = 367 bits (406), Expect = 2e-99 Identities = 239/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3006 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 3065 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||| Sbjct 3066 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCAGC 3124 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 3125 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 3183 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 3184 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 3243 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 3244 AAAGAGCTCTCAATCTGTC 3262 >seq520 Length=716584 Score = 176 bits (194), Expect = 7e-42 Identities = 175/221 (79%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 ||||||| ||||||||||||||||||| ||| |||| | || | |||| | || | Sbjct 446629 ACATCTACGGGCATCACAGACCTGTTACTGC-TCAATCC-CCTCTAGCTGAACTTCACTT 446572 Query 102 GTCCCTCTAAGAAGCCAGCCACCAAC--CAT--AGTCGATGGGGCTATTTAGCAGGTTAA 157 ||||||||||| ||| | | || | | |||||| | || |||||| || Sbjct 446571 GTCCCTCTAAGGAGCTGTACTCGGACTGCGTGGAGTCGA-GCAAATAGTTAGCATGTCGG 446513 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct 446512 AGTCTCGTTTGTTATCGGAATTAACCAGACAAATCGCTCCACCAAGTAAGAATGGCCATG 446453 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||||| ||||| ||||||||||||||| Sbjct 446452 CACCACCACCCACAGAATCGAGAAACAGCTATCAATCTGTC 446412 >seq677 Length=1509994 Score = 154 bits (170), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| || || |||| |||| |||||||||||||||||||||||||||||| | Sbjct 716619 TCAGTGTGGCACGYGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGTA-C 716677 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA---- 131 || || | ||||| | | | | |||||||||||||| | | | |||| | Sbjct 716678 AATCTGGTGT-GGCTGAACACTACTTGTCCCTCTAAGAAGGCTGATTCAAACCGCACYGG 716736 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 ||||| | || |||||| || |||| | | |||||||||||||||||||||||| Sbjct 716737 GTCGAGTAAG-TAGTTAGCATGTCGGAGTCTTGATTGTTATCGGAATTAACCAGACAAAT 716795 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 | ||||||||||||||||| |||||||||||||||| Sbjct 716796 CGCTCCACCAACTAAGAACAGCCATGCACCACCACC 716831 >seq800 Length=1117784 Score = 132 bits (146), Expect = 8e-29 Identities = 165/221 (75%), Gaps = 14/221 (6%) Strand=Plus/Plus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 |||||||||||||||| |||| |||| || | |||| || | |||||| | ||| | Sbjct 392748 ACATCTAAGGGCATCAAAGACTTGTTGTTTC-TCAATCT-CGTGTGGCTGAACACCACTT 392805 Query 102 GTCCCTCTAAGAAGCCAGCCAC--CAACCATAGTCGATGGGG--CTATTTAGCAGGTTAA 157 |||||||||||| | | ||| | | || || | |||||||||| || | Sbjct 392806 GTCCCTCTAAGACTTTGGATTCTGCAAAGCTGG-CGCTGAGTAACTATTTAGCACGTCAG 392864 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||||| ||||||||| ||||||| ||||||||||| ||| |||||||||| ||||||| Sbjct 392865 AGTCTCATTCGTTATCCAAATTAACTAGACAAATCACCCCATCAACTAAGAATGGCCATG 392924 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| |||||||||||||||| ||||||| Sbjct 392925 CACTGCCACC-------TCAAGAAAGAGCTATCTATCTGTC 392958 >seq362 Length=1088492 Score = 113 bits (124), Expect = 7e-23 Identities = 142/190 (75%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 |||| |||||||||| ||||||| ||||| |||| ||| ||| ||||| | | || | Sbjct 521438 ACATGTAAGGGCATCCCAGACCT--TATTGT-TCAATCTTGCAT-GGCTGAACGTCACTT 521383 Query 102 GTCCCTCTAAGAAGCCAGCCACCAACCATA----GTCGATGGGGCTATTTAGCAGGTTAA 157 |||| ||||||||| | | | ||| | ||| | | ||| ||||| || Sbjct 521382 GTCCTTCTAAGAAGTTGGACTCAGACCGCACGGGGTCAA-GTAACTAGCTAGCATGTCGG 521324 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 ||||| |||||||| |||||||||||||||| || |||||||| |||||||| ||||| Sbjct 521323 AGTCTCATTCGTTATTGGAATTAACCAGACAATTCGCTCCACCAGCTAAGAACAACCATG 521264 Query 218 CACCACCACC 227 ||||| |||| Sbjct 521263 CACCATCACC 521254 >seq802 Length=109773 Score = 98.7 bits (108), Expect = 2e-18 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 || |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | Sbjct 28389 TCAGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACAACCACCCACA 28448 Query 232 GAAT 235 |||| Sbjct 28449 GAAT 28452 >seq1646 Length=871298 Score = 96.9 bits (106), Expect = 6e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 687381 AACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 687438 Score = 84.2 bits (92), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| ||| || ||| |||| | ||||||||||||||||||||||||||||| Sbjct 686388 TCCGCTCAGTGTGGCGTGCATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATT 686447 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCC 97 | ||||| ||| ||| |||| | ||| Sbjct 686448 G-CTCAATCTTGTATT-GCTGAATGCC 686472 >seq1704 Length=2072032 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/80 (84%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||| |||| |||| |||||| ||||||||||||||||||| |||||| ||||| Sbjct 1509500 CAGACAAATTGCTCCGCCAAGTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAA 1509559 Query 243 GAGCTATCAATCTGTCCTCC 262 ||||||||||| ||| Sbjct 1509560 -----ATCAATCTGTCTTCC 1509574 >seq1020 Length=1504122 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 199 CCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||||||||||||||||| ||| |||||| |||||||| |||||||| Sbjct 1115063 CCAACTAAGAACAGCCATGCACCACCACCCACAGACTCAAGAGAGAGCTATTAATCTGTC 1115004 >seq12 Length=578463 Score = 86.0 bits (94), Expect = 1e-14 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | ||||||||| |||| |||||| ||||||||||| ||||||| Sbjct 194858 GCTAGTTAGCATGCCCGAGTCTCGTTCAGTATCAGAATTACCCAGACAAATCGCTCCACC 194799 Query 201 AACTAAGAACGGCCATGCACCACCACC 227 ||||| |||| || || |||||||||| Sbjct 194798 AACTACGAACAGCTATACACCACCACC 194772 >seq168 Length=1207671 Score = 84.2 bits (92), Expect = 3e-14 Identities = 72/89 (81%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| |||||||||| ||||||| |||||||||||||||||| |||||||||||| Sbjct 163359 TTATTGGAATTAACCTGACAAATTGCTCCACCAACTAAGAACG-----GCACCACCACCC 163413 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGT 257 | ||| | ||||| ||| ||| ||||| Sbjct 163414 ACAGATTGGAGAAAATGCTTTCAGTCTGT 163442 >seq1131 Length=1126809 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||| |||| |||||||||||||||||||||||| ||||||||||||| ||| |||| Sbjct 457523 CACGAACTCAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGCATTATAAATCAA 457582 Query 257 TCCT 260 |||| Sbjct 457583 TCCT 457586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796748768997