Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2690 260 1e-67 seq1817 104 2e-20 seq1829 98.7 1e-18 seq1794 93.3 4e-17 seq2881 86.0 6e-15 seq1461 80.6 3e-13 seq538 73.4 4e-11 seq323 73.4 4e-11 >seq2690 Length=7015 Score = 260 bits (288), Expect = 1e-67 Identities = 173/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 3762 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 3703 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 3702 CATTAGCATGGAATAATGAAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 3644 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 3643 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 3584 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 3583 TTGGATTTATT 3573 >seq1817 Length=85461 Score = 104 bits (114), Expect = 2e-20 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACC 67 || ||||||||||||||||||||| |||||||||||||| | || |||||| | | Sbjct 44486 ACATTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGC 44545 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-----TTTCTAGGACCGCCC 122 |||||||| ||||||||| | |||||||||||||| || ||||| || | Sbjct 44546 TAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTTTCTCTGAACTGGG 44604 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| || | |||| | |||||| | ||||| | | ||||||||||||| Sbjct 44605 GCCATGATTAAGAGGGATGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTT 44664 Query 183 GGA 185 ||| Sbjct 44665 GGA 44667 Score = 93.3 bits (102), Expect = 4e-17 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 54952 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAGTCGCCTGAATACCGCAGCTAG 55011 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 || |||| ||||||||| | |||||||||||||| ||||| Sbjct 55012 GAGTAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 55050 >seq1829 Length=67003 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/180 (73%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 39320 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 39379 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT-----CTAGGACCGCCCGTA 125 ||||||| ||||||||| | |||||||||||||| ||||| || || | | Sbjct 39380 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTCTGAACTGGGGCC 39438 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 39439 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 39498 >seq1794 Length=89003 Score = 93.3 bits (102), Expect = 4e-17 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || || ||| | | | Sbjct 64604 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAGTCGCCTGAGTACCGCAGCTAG 64663 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 64664 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 64702 Score = 86.0 bits (94), Expect = 6e-15 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 56901 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCTGAATACCGCAGCTAGG 56960 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 | |||| ||||||||| | ||||||| |||||| ||||| Sbjct 56961 AGTAATGGAATAGGAC-TCCGGTTCTGTTTTGTGGGTTT 56998 >seq2881 Length=5659 Score = 86.0 bits (94), Expect = 6e-15 Identities = 129/180 (72%), Gaps = 10/180 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATG 70 ||||||||||||||||||| | ||||||||||||| | || |||||| | | | Sbjct 280 TTTACTTTGAAAAAATTAGTG--TTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 337 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT-----CTAGGACCGCCCGTA 125 ||||||| ||||||||| | |||||||||||||| ||||| || || | | Sbjct 338 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTCTGAACTGGGGCC 396 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 397 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 456 >seq1461 Length=366368 Score = 80.6 bits (88), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAA--TTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCA 68 ||| ||||||||||| |||||| || ||||||| || |||| |||||| | | Sbjct 164504 TTTCCTTTGAAAAAAAATTAGAGTATTTAAAGCAGACCCAGTTGCCAGAATACTGCAGCT 164563 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT---CTAGGACCGCCCGTA 125 |||||||| ||||||||| | ||||||||||||| | ||| || || | | Sbjct 164564 AGGAATAATGGAATAGGAC-TCTGGTTCTATTTTGTGGATTTTCTCTCTGAACTGGGGCC 164622 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | |||| | | |||| | ||||| ||| | |||||||||||||||| Sbjct 164623 ATGATTAAGAGGGATGGCCAGGGGCATTTGTATTGTGTTGCTAGAGGTGAAATTCTTGGA 164682 >seq538 Length=1550018 Score = 73.4 bits (80), Expect = 4e-11 Identities = 80/102 (78%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAAT-TAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCA 68 |||||||||||||||| |||| |||||||| |||| || ||| ||||| | | Sbjct 1372945 TTTACTTTGAAAAAATAAAGAGTGTTCAAAGGCGGCCCAGTTGTCTC-AATACTGCAGCT 1373003 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| | ||| |||||||||| ||||| Sbjct 1373004 AGGAATAATGGAATAGGAC-TCCGGGTCTATTTTGTGGGTTT 1373044 >seq323 Length=94756 Score = 73.4 bits (80), Expect = 4e-11 Identities = 72/91 (79%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATGGAATAATAG 79 |||||||||||| ||||||||||||| |||| |||||| | | |||||||| | Sbjct 17469 AAAAAATTAGAGTATTCAAAGCAGGCCCGGTTGCCTGAATACTGCATCTAGGAATAATGG 17410 Query 80 AATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| | || ||||||||| | ||||| Sbjct 17409 AATAGGAC-TCCGATTCTATTTTATGGGTTT 17380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511967080480