Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4078 302 1e-79 >seq4078 Length=1807 Score = 302 bits (334), Expect = 1e-79 Identities = 283/362 (78%), Gaps = 26/362 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| |||||| |||| ||||||||||||||| ||| | | ||| Sbjct 1320 GTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 1261 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1260 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 1201 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 1200 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 1141 Query 343 CCTTCGGGTCGTAAAGCTCTGT---CCTCAAGGAAG------------ATA--------- 378 |||||| | ||||||| || | |||||| ||| Sbjct 1140 TCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCATTAACCTAATACGTTAGTGT 1081 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||| ||| || |||| |||||||||| |||||||||||||||||||||| Sbjct 1080 TTTGACGTTACCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 1021 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| | ||||||||||||| |||| Sbjct 1020 GAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTTGTTAA 962 Query 498 GT 499 || Sbjct 961 GT 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497500604288