Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq5308 331 3e-88 >seq5308 Length=1285 Score = 331 bits (366), Expect = 3e-88 Identities = 333/427 (78%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 |||||| |||| ||||||| |||||||| ||||||| ||||||| |||| |||||| Sbjct 1 CCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTACCGTTGAA 60 Query 117 AAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 176 || |||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||| Sbjct 61 AAGTTAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGT 120 Query 177 TCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTT 236 |||| ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| Sbjct 121 TCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTT 180 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-T 295 |||||||||||||| |||||||||||||| |||||||||||||| | | ||| Sbjct 181 TCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGC 240 Query 296 TTACCGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | | ||||| | ||| ||||||||| |||||| | ||| || || || Sbjct 241 CGAGCATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCA 298 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| |||||||||| ||| || | | | ||||| | ||||| || || ||| | Sbjct 299 GACCGTCAGCTAAGGTCCCAAAGTTATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTA 356 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||||||||||| |||||||| |||||||||| | |||||||| |||||| |||||||| Sbjct 357 GACAGCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACT 415 Query 474 AGTCGAG 480 ||||||| Sbjct 416 AGTCGAG 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689487861248