Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq321 450 4e-124 seq1794 376 8e-102 seq1829 363 5e-98 seq1306 203 1e-49 seq2881 201 4e-49 seq2158 192 2e-46 seq677 156 1e-35 seq244 122 3e-25 seq537 114 4e-23 seq926 105 2e-20 seq538 104 8e-20 seq2690 102 3e-19 seq121 98.7 3e-18 seq821 80.6 9e-13 seq1133 78.8 3e-12 seq621 75.2 4e-11 >seq321 Length=583724 Score = 450 bits (498), Expect = 4e-124 Identities = 431/544 (79%), Gaps = 30/544 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||| | | |||| ||| ||| ||| |||| | ||||||||||||||||||| Sbjct 125920 CTTCTGCACCATGGGAGGTTTTTGTCCTCTCTGAGCGCGCCTTAGGACACCTGCGTTACA 125861 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| || |||||| ||||||||||||||| || |||| || ||| || Sbjct 125860 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGCCACTGTCCCCAGAGCGGGTC 125801 Query 127 G-GCCCG------CGA-AGGACCTTAACGCCAGAAAATGGTCGGTGA-AGACCAGTTC-- 175 ||||| || ||| ||| || |||||| |||| || || || Sbjct 125800 ATGCCCGGTGGCACGCTAGGCACTTGACACCAGAA--------GTGAGAGCCCGCTTGGG 125749 Query 176 ---CGCTTCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA 231 ||| || | ||||| |||||||| |||| |||||||| |||||| | | | Sbjct 125748 GCTCGCCTCCCCGTATAAGTGGAAAAAACGCTAAGAGTAGTGGTGTTTCACCGCCAGCCA 125689 Query 232 AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 | | |||||||||||||||||||||||| || |||||| | | ||||||||||||| Sbjct 125688 GA-GCCTCCCACTTATTCTACACCTCTCATGTGTCTTCACAGTGCCAGACTAGAGTCAAG 125630 Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||| Sbjct 125629 CTCAACAGGGTCGTCTTTCCCCGCTGATGTTGCCAAGCCCATTCCCTTGGCTATGGTTTC 125570 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||||| || |||||||||||||||||||||| ||| |||||||| ||||||||| | Sbjct 125569 ACTAGATAGCAGGTAGGGACAGTGGGAATCTCGTTCATCTATTCATGCCCGTCACTAAGT 125510 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 125509 --ATGACGAGGCATTTGGCTACCTTAAGAGAGTGATAGTTACTCCCGTCGTTTACCCGCG 125452 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||| |||||||||||||| |||||||||||||||||||||||| | ||| ||||||| Sbjct 125451 CTTCATTGAATTTCTTCAC--TGACATTCAGAGCACTGGGCAGAA--CTCATCGCGTCAA 125396 Query 532 CATC 535 |||| Sbjct 125395 CATC 125392 >seq1794 Length=89003 Score = 376 bits (416), Expect = 8e-102 Identities = 276/317 (87%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 ||||| ||||||||||||| ||||||||||||||| ||| ||| | | |||||||||| Sbjct 89000 TAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGGAGC--CTCCCACTTA 88943 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 |||||||||||||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 88942 TTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTC 88883 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 88882 TTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTA 88823 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 88822 GGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 88763 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT---ACCCGC--GCTTGGTTGAA 481 |||||| ||| | | | ||| ||| |||||||||| |||||| || | ||| Sbjct 88762 TGGCTATTTTATGGGGGCCATGGTTTAGCCCGCCGTTTATCACCCGCTGACTCCGGCGAA 88703 Query 482 TTTCTTCACTTTGACAT 498 ||||||||||||||||| Sbjct 88702 TTTCTTCACTTTGACAT 88686 Score = 96.9 bits (106), Expect = 1e-17 Identities = 82/99 (83%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAA 233 |||| ||| | ||||| ||||||||||||| ||||||||||||||| || |||| | Sbjct 85117 CCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGGA- 85059 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 | |||||||||||||||||||||||| ||| |||||| Sbjct 85058 -GCCTCCCACTTATTCTACACCTCTCATGTCTCTTCACA 85021 Score = 95.1 bits (104), Expect = 4e-17 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAACGGCTCCCACTTA 246 ||||| ||||||||||||| ||||||||||||||| || |||| | | |||||||||| Sbjct 87429 TAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGGA--GCCTCCCACTTA 87372 Query 247 TTCTACACCTCTCAAGTCATTTCACA 272 |||||||||||||| ||| |||||| Sbjct 87371 TTCTACACCTCTCATGTCTCTTCACA 87346 >seq1829 Length=67003 Score = 363 bits (402), Expect = 5e-98 Identities = 275/319 (86%), Gaps = 9/319 (3%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 ||||| ||||||||||||| ||||||||||||||| ||| ||| | | |||||||||| Sbjct 44563 TAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGGAGC--CTCCCACTTA 44506 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 |||||||||||||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 44505 TTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTC 44446 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 44445 TTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTA 44386 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 44385 GGGACAGTGGGAATCTCGTTCATCCATTAATGCGCGTCACTAATTAGATGACGAGGCATT 44326 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT---ACCCGC--GCTTGGTTGAA 481 |||||| ||| | | | ||| ||| |||||| ||| |||||| || | ||| Sbjct 44325 TGGCTATTTTATG-GGGCCATCGTTTAGCCCGCCATTTATCACCCGCTGACTCCGGCGAA 44267 Query 482 TTTCTTCACTTTGACATTC 500 |||||||||||| |||||| Sbjct 44266 TTTCTTCACTTTAACATTC 44248 >seq1306 Length=1119290 Score = 203 bits (224), Expect = 1e-49 Identities = 175/218 (80%), Gaps = 14/218 (6%) Strand=Plus/Minus Query 201 GATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCA 260 |||||| |||||||||||||||| ||| | || | ||||||||||||| || |||||| Sbjct 768624 GATAAGAGTAGTGGTATTTCACTGGCGGCTGAA-GCTTCCCACTTATTCTGCAGCTCTCA 768566 Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 |||| ||| |||||| || |||| ||||||| || |||| ||||||| Sbjct 768565 TGTCA-------------GACAAGAGTCGAGTTCAATAGGGTCTGCTGTCCCTGCTGATT 768519 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 |||||||| |||||||||||||||| | ||||||||| || || ||||||||||||| Sbjct 768518 TTGCCAAGCCTGTTCCCTTGGCTGTGGATCTGCTAGATAGCAGCTAAGGACAGTGGGAAT 768459 Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||| || |||||||||||| |||||||||||||||||| Sbjct 768458 CTCATTTATCCATTCATGCACGTCACTAATTAGATGAC 768421 >seq2881 Length=5659 Score = 201 bits (222), Expect = 4e-49 Identities = 148/171 (87%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 5659 CCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGTTCATCCATT 5600 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||||||||||||||||||||||||||| ||| | | ||||| ||| Sbjct 5599 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTATTTTATGGGGGTCATGGTTTAG 5540 Query 455 CCCGCCGTTT---ACCCGC--GCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||| ||| |||||| || | |||||||||||||||||||||| Sbjct 5539 CCCGCCATTTATCACCCGCTGACTCCGGCGAATTTCTTCACTTTGACATTC 5489 >seq2158 Length=16997 Score = 192 bits (212), Expect = 2e-46 Identities = 148/174 (85%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 |||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||| Sbjct 7560 GTTCCCTTGGCTGTGGTTTCACTAGATAGCAGCTAGGGACAGTGGGAATCTCGTTCATCC 7619 Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||| |||||||||||||||||||||||||||||||| ||| | | | ||| ||| Sbjct 7620 ATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTATTTTATGGGGGACATGGTT 7679 Query 452 ACTCCCGCCGTTT---ACCCGC--GCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||| ||| |||||| || | |||||||||||||||||||||| Sbjct 7680 TAGCCCGCCATTTATCACCCGCTGACTCCGGCGAATTTCTTCACTTTGACATTC 7733 >seq677 Length=1509994 Score = 156 bits (172), Expect = 1e-35 Identities = 193/266 (73%), Gaps = 25/266 (9%) Strand=Plus/Minus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||||||| |||||||||| | ||| ||||| | |||||| | |||||||| | Sbjct 683533 AGAGTCAAGCTCAGCAGGGTCTTCATCCCCTGCTGAGTTTACCAAGCTCATTCCCTTGAC 683474 Query 343 TGTGGTTTCGCTA----GAT----AGT--------------AGATAGGGACAGTGGGAAT 380 | |||||| || | ||| ||| || || |||||||||||| Sbjct 683473 TTTGGTTTAGCCACAGAGATTCCCAGTGTCCCCTTGATTACAGCTAATGACAGTGGGAAT 683414 Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 || || || |||||||| | | || |||||||||| |||| |||||||||| |||||| Sbjct 683413 TTCATTCATGCATTCATGAACATTACAAATTAGATGATGAGGAATTTGGCTACTTTAAGA 683354 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||| |||||| || |||| | | | ||||||| ||||||| ||| || Sbjct 683353 GAGTCATAATTACTCTTGC---TTACGGTCACCTCACTGAATTTGATCACTTTTACACTC 683297 Query 501 AGAGCACTGGGCAGAAATCACATTGC 526 | ||||||| ||||||||||| ||| Sbjct 683296 ACAGCACTGACCAGAAATCACACTGC 683271 >seq244 Length=6775444 Score = 122 bits (134), Expect = 3e-25 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| ||||||| |||| |||| | |||||||||||||| |||| | Sbjct 1418298 CTTCTGCTCTACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGTGTTAAG 1418239 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||| ||| ||||||||| ||| ||||||||||| || |||| Sbjct 1418238 GTTTAACAGGTGTACCGCCCCAGTCAAGCTCCCCACCTGCCACTGTC 1418192 >seq537 Length=828645 Score = 114 bits (126), Expect = 4e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||| | |||||||||| | ||||||||| ||| |||||||||||||||||||||| Sbjct 522868 GAGAGACTTAGTTACTCCTGATGTTTACCCGTACTTCATTGAATTTCTTCACTTTGACAT 522927 Query 499 TCAGAGCACTGGGCAGAAATCACATTGC 526 ||||||||||||| |||||||||||||| Sbjct 522928 TCAGAGCACTGGGTAGAAATCACATTGC 522955 >seq926 Length=992521 Score = 105 bits (116), Expect = 2e-20 Identities = 107/140 (76%), Gaps = 11/140 (8%) Strand=Plus/Plus Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 || |||||||||||||| ||| ||| |||| || ||||||||||||||||||| Sbjct 882375 AGTTAGGGACAGTGGGATTCTTGTT--------CATGTGCTTCACTAATTAGATGACGAG 882426 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT---TACCCGCGCTTGGTT 478 | ||||| | ||||||| |||||||||||||||| | |||| | | | ||| | Sbjct 882427 GAATTTGACCACCTTAATAGAGTCATAGTTACTCTCATCGTTTGATGTCTGAGCTACAGT 882486 Query 479 GAATTTCTTCACTTTGACAT 498 ||||||||||| |||| ||| Sbjct 882487 GAATTTCTTCATTTTGCCAT 882506 >seq538 Length=1550018 Score = 104 bits (114), Expect = 8e-20 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||| || ||||||||| |||||||| || |||| |||||||| ||||||| |||||| Sbjct 556535 CCTCAATAGAGTCATAATTACTCCCACCATTTATCCGCGCTTCACTGAATTTATTCACT- 556593 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||| ||||||||||| | |||||| Sbjct 556594 -GACATTCGGAGCACTGGGTAGAAATCACATCACATCAACA 556633 >seq2690 Length=7015 Score = 102 bits (112), Expect = 3e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 59 >seq121 Length=1977471 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || || | ||||||| |||| |||| | ||| ||||||||||||||| Sbjct 307016 CTTCTGCTCCACGGGGGGTTTCTGTCCTCCCTGAGCTCGCCTCAGGACACCTGCGTTACA 306957 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| || |||||| || ||||||||||||||| || |||| Sbjct 306956 GTTTGACAGGCGTACCGCCCAAGTCAAACTCCCCACCTGCCACTGTC 306910 >seq821 Length=710128 Score = 80.6 bits (88), Expect = 9e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||| ||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 107746 CTTCTGCTCCACAAGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACA 107805 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 || | |||| | ||||||| |||||||||| | || || Sbjct 107806 GTGTGACAGGGGCATTGCCCCAGTCAAACTCCCCTCTTGCCA 107847 >seq1133 Length=499911 Score = 78.8 bits (86), Expect = 3e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGC 84 || |||| |||| |||| | |||||||||||||| |||| |||| |||| ||| ||| Sbjct 313702 TTGCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGTGTTACAGTTTGACAGGTGTATCGC 313761 Query 85 CCCAGCCAAACTCCCCACCTG 105 ||||| |||||| |||||||| Sbjct 313762 CCCAGTCAAACTTCCCACCTG 313782 >seq621 Length=230275 Score = 75.2 bits (82), Expect = 4e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||| | || |||||||||||||| ||||||| |||| |||||| |||||| ||||| | Sbjct 151879 TGAGCTCACCGTAGGACACCTGCGTGATGGTTTGACAGGTGTGCCACCCCAGACAAACCC 151938 Query 98 CCCACCTGACA 108 || ||||| || Sbjct 151939 CCTACCTGCCA 151949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635091471776