Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2690 217 2e-54 seq1829 105 1e-20 seq1133 96.9 6e-18 seq1794 87.8 3e-15 seq1065 87.8 3e-15 seq1335 80.6 4e-13 seq105 78.8 2e-12 seq323 77.0 5e-12 seq977 75.2 2e-11 seq163 73.4 6e-11 >seq2690 Length=7015 Score = 217 bits (240), Expect = 2e-54 Identities = 223/283 (79%), Gaps = 15/283 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 6792 GTACGAGAGGAACAACTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 6735 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 6734 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6675 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | || ||| | |||||||||||||| | Sbjct 6674 GAACGCGGTGATAC-CACCCGCACGT-ACAGATGGACAAGAATAGGCTTCGGCTTAGCGT 6617 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGG-GGCGCTCAGCTGGCGGA 235 || ||||||| | | |||| || |||||| | || | | | | | ||| | Sbjct 6616 CTCAGCAGGCGATTCCTCCACGG-----CCACGGAAGAGTGGTTGTGGT-ATTTCGCGTA 6563 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||||| || | || ||| |||||||||||||||||| Sbjct 6562 TTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 6520 >seq1829 Length=67003 Score = 105 bits (116), Expect = 1e-20 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 50114 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 50171 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| |||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 50172 GGTGCGACGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCCT 50230 Query 121 GAACGGGGTGAT 132 ||| ||||| Sbjct 50231 AGACGCAGTGAT 50242 >seq1133 Length=499911 Score = 96.9 bits (106), Expect = 6e-18 Identities = 102/132 (77%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 313382 GTASGAGAGGAACCGCAGG-TTCRGAC-ATTTGGTGTMTGTGCTTGGCTGAGGAGCCAAT 313325 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||| ||| |||||||| ||||| |||||||||||||||||| |||| Sbjct 313324 GGTGCGAAGCTACCATATGCGGGATTATGACTGAATGCCTCTAAGTCAGAATCC-TGCCT 313266 Query 121 GAACGGGGTGAT 132 ||| ||||| Sbjct 313265 AGACGCAGTGAT 313254 >seq1794 Length=89003 Score = 87.8 bits (96), Expect = 3e-15 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 61141 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 61198 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 | ||||||||||||||||| |||||||| |||||||||||| Sbjct 61199 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCT 61240 >seq1065 Length=1864834 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||| | | ||| | || | || |||| || || | Sbjct 789182 GTACGAGAGGAACCGCAGG-TTCACAC-ATCTGGGGTATGTGCTTGGCTGAGGAGCCAAT 789125 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | || |||||||||||||| |||||||| ||||| |||||||||||||||||| |||| Sbjct 789124 GGTGCAAAGCTACCATCTGCGGGATTATGACTGAATGCCTCTAAGTCAGAATCC-TGCC 789067 >seq1335 Length=1762115 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||| ||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 1243089 GTACGGGAGGAACTACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1243146 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | | |||| |||||||||| |||||||| |||||||||||||||||||||| Sbjct 1243147 GGTGTGAAGTTACCATCTGCGGGATTATGAGTGAACGCCTCTAAGTCAGAATC 1243199 >seq105 Length=1228816 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 325860 GTACGAGAGGAACCACAGC-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 325803 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||| | ||||| ||||| | |||||| ||||||||||||||||| |||| Sbjct 325802 GATGCGAAGCTGACGTCTGCGGGATTTTATCTGAACACCTCTAAGTCAGAATCC-TGCC 325745 >seq323 Length=94756 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||| || | || || | || | || |||| || || | Sbjct 14495 GTACGAGAGGAACCACAGG-TTCA-AACATTTCGTGTATGTGCTTGGCTGAGGAGCCAAT 14438 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| |||||| ||||||||| Sbjct 14437 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAATAACTCTAAATCAGAATCC 14384 >seq977 Length=2815705 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 ||||||||| || | |||||| | ||||| |||| | || |||| || || || | Sbjct 84071 GAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTTTGTGCTTGGCTGAGGAGCCACTGGTG 84128 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || |||||| || ||| |||||| | |||||| |||| |||||||||||| Sbjct 84129 CGGAGCTACTATGTGCAGGATTAAGACTGAACTCCTCCAAGTCAGAATCC 84178 >seq163 Length=1227677 Score = 73.4 bits (80), Expect = 6e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGG-ATTATGGCTGAACGCCTCTA 103 || |||| || ||||| | ||||||||||||| |||| |||||| ||||| ||||||| Sbjct 335080 TGACTGAGGAGCCAGTGGTGTGAAGCTACCATCT-CTGGAATTATGACTGAATGCCTCTA 335138 Query 104 AGTCAGAATCCATGCC 119 ||||||||||| |||| Sbjct 335139 AGTCAGAATCC-TGCC 335153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819147328768