Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1696 244 8e-60 seq913 132 4e-26 seq34 96.9 3e-15 >seq1696 Length=952724 Score = 244 bits (270), Expect = 8e-60 Identities = 762/1169 (65%), Gaps = 35/1169 (3%) Strand=Plus/Minus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| | |||| || || ||||| || ||||| || | ||| ||||||||| Sbjct 105910 CAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCT 105851 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || || | ||| || ||||||| || || ||||| || || || |||||||| Sbjct 105850 GGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCAT 105791 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 ||||| | || || ||| | || |||| | | | || | || | | Sbjct 105790 TGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTT 105731 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||| ||||| ||| | | || | || | ||||| || | || | | | || Sbjct 105730 CCAGTCCCACA--GGTCCGTTGGCGTCTTCTTC----CACATGTCGTACTGGAAGATGCC 105677 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 ||||| |||| ||||| | | | ||||| || | || ||| | | ||| Sbjct 105676 CTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACA 105617 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 || | ||| || || || | ||||||||||| || || | || || | || Sbjct 105616 ACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGC 105557 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 |||| ||| || | || || |||||||| ||| | ||| |||| ||||| ||||| Sbjct 105556 CTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCC 105497 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATT 65892 ||| || || || | || |||| ||| || | | ||||| || |||||||| || Sbjct 105496 AATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTT 105437 Query 65893 GATATCGATAATGCGATTCAAATTGCGTGTCACC-ACATG---CAC-GATACGTCGCAAT 65947 || |||||||| || || || | || || || | ||| ||| | || | Sbjct 105436 TATGTCGATAATCTTGTTTAAGTTTC-TGACAATTACTTTGGTCACAGATGC----CAGT 105382 Query 65948 TGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGG 66007 | || || ||| || | || || || ||| || ||| ||| || Sbjct 105381 TTTTTAAAGTCATAA------GTCCGCTCAGGTGTGACGTACATG------TTGAGA--- 105337 Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 || | || || || ||||||||||| | |||||| ||| || ||||| ||||| Sbjct 105336 GCGATGGAGGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCT 105277 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||| || || ||||| ||||| |||| |||||| || || ||||| | ||||| Sbjct 105276 GTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAG 105217 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 || || ||||||| ||||||||| || || || || || |||||||||||||||| | Sbjct 105216 GCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTAC 105157 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAA-TGTTCGTA 66246 || || | ||||||||| ||| |||| || | ||||| || | ||| Sbjct 105156 CACAGCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGT-GTA 105098 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 ||| | || || || ||||| ||| ||| | || || | | |||||||| Sbjct 105097 GAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACAT 105038 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 ||| ||||| || ||| | || || | ||| || || ||||| ||||| ||||| Sbjct 105037 CAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGC 104978 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGA 66425 |||||| || || | ||||| ||||| || | || ||| || || || || |||| Sbjct 104977 GTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGA 104919 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 | ||||| | || |||||| || |||||||| |||||||| | || | |||| Sbjct 104918 AGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGT 104859 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 ||| || ||||||||||| || || |||||| |||| | || ||| || ||||||| Sbjct 104858 TGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCC 104799 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | || || ||| |||||||| ||||| Sbjct 104798 CATTGGAGCAGCCGTTGGTGCCAGCGATG 104770 >seq913 Length=88738 Score = 132 bits (146), Expect = 4e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| || ||||||||||| ||||||| Sbjct 60452 TGGAGCGGTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTCCAGA 60511 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | || ||||| |||||||||| || Sbjct 60512 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 60571 Query 61376 A 61376 | Sbjct 60572 A 60572 Score = 132 bits (146), Expect = 4e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| || ||||||||||| ||||||| Sbjct 73987 TGGAGCGGTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTCCAGA 73928 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | || ||||| |||||||||| || Sbjct 73927 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 73868 Query 61376 A 61376 | Sbjct 73867 A 73867 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| |||||||| ||||| | |||||||||||||| | || || |||| |||||| Sbjct 60066 GAGAACCCTCGTCGCTTCGTCATCTTCCCCATCGAGTACCACGACATCTGGCAGATGTAC 60125 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||||||| || ||||||||||| | ||||||||| Sbjct 60126 AAGAAGGCGGAGGCGTCCTTCTGGACAGCGGAGGAGGT 60163 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| |||||||| ||||| | |||||||||||||| | || || |||| |||||| Sbjct 74373 GAGAACCCTCGTCGCTTCGTCATCTTCCCCATCGAGTACCACGACATCTGGCAGATGTAC 74314 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||||||| || ||||||||||| | ||||||||| Sbjct 74313 AAGAAGGCGGAGGCGTCCTTCTGGACAGCGGAGGAGGT 74276 >seq34 Length=1455329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || ||||| ||||| ||||| ||| | |||||||||| ||| || ||| Sbjct 919612 GTGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGA 919671 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| ||||||||||| | ||| || || || || || || || Sbjct 919672 TTGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGC 919731 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 || |||||||| | || |||||| Sbjct 919732 GATTCAATGATAGTGTACCAAAG 919754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397535841345680